Gene annotation
Transcriptome id Sobic.002G334500.1
Synonym Sb02g036030, CSLD2, ATCSLD2
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
CSLF3 - cellulose synthase-like family F
beta1,3
1,4 glucan synthase, expressed
UniProt A0A1B6QEV0
Pfam PF03552
Panther DB PTHR13301 PTHR13301:SF71
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016760; cellulose synthase (UDP-forming) activity GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT5G16910 : cellulose-synthase like D2
RAP-DB (Rice) LOC_Os07g36750.1 : CSLF3 - cellulose synthase-like family F; beta1,3;1,4 glucan synthase, expressed
MaizeGDB (Corn) Zm00025a055112 , Zm00025a048344 , Zm00025a006226 , Zm00025a030058
Brachypodium PNT68814 , KQJ99839 , KQJ99838 , PNT68811 , KQJ99837 , KQJ95295 , KQK15829 , PNT68813 , KQJ99840 , PNT68812
Barley HORVU2Hr1G021450.2 , HORVU2Hr1G021450.3 , HORVU2Hr1G021450.6 , HORVU2Hr1G021450.4 , HORVU2Hr1G021450.5 , HORVU7Hr1G121040.6 , HORVU7Hr1G121040.5 , HORVU7Hr1G121040.4 , HORVU7Hr1G121040.3 , HORVU7Hr1G121040.2 , HORVU7Hr1G121040.1 , HORVU1Hr1G022900.2 , HORVU1Hr1G022900.3 , HORVU1Hr1G022900.6 , HORVU1Hr1G022900.7 , HORVU1Hr1G022900.4 , HORVU1Hr1G022900.5 , HORVU1Hr1G022900.8 , HORVU1Hr1G022900.9 , HORVU2Hr1G042240.4 , HORVU2Hr1G042240.5 , HORVU2Hr1G042240.1 , HORVU2Hr1G042240.2 , HORVU2Hr1G042240.3 , HORVU1Hr1G022900.10 , HORVU1Hr1G022900.11
Wheat TraesCS7D02G555000 , TraesCS2D02G217000 , TraesCS2D02G126100 , TraesCS2A02G210000 , TraesCS2A02G210400 , TraesCS2D02G216800 , TraesCSU02G003300 , TraesCS2B02G236200 , TraesCS2B02G236200 , TraesCS2B02G236500 , TraesCS1A02G099100 , TraesCS2A02G122600 , TraesCS2B02G144900 , TraesCS1D02G107100 , TraesCS7D02G294300 , TraesCS2A02G565500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G115400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.009G115300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.006G007650 - -
4 Sobic.002G108400 cytochrome P450, putative, expressed -
5 Sobic.002G202700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY76, expressed -
6 Sobic.006G005500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@von Willebrand factor type A domain containing protein, putative, expressed -
7 Sobic.001G125700 lipoxygenase, putative, expressed K15718: linoleate 9S-lipoxygenase
8 Sobic.001G201800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
9 Sobic.007G076000 Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@Cinnamyl alcohol dehydrogenase 9 CAD9 (At)(PubMedID : 27208977)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
10 Sobic.008G028600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY112, expressed -
11 Sobic.005G219000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@patatin, putative, expressed -
12 Sobic.006G005400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@von Willebrand factor type A domain containing protein, putative, expressed -
13 Sobic.007G055600 "Production of (E)-alpha-berg-amotene, sesquisabinene A, (E)-beta-farnesene, zingiberene, beta-bisabolene and beta-sesquiphellandrene, cytoplasm"(PubMedID : 21880075)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@terpene synthase, putative, expressed K14174: beta-farnesene/exo-alpha-bergamotene synthase
14 Sobic.006G007600 polyphenol oxidase, putative, expressed -
15 Sobic.010G225500 - -
16 Sobic.002G040400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
17 Sobic.002G298400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dehydrodolichyl diphosphate synthase, putative, expressed K11778: DHDDS, RER2, ditrans,polycis-polyprenyl diphosphate synthase
18 Sobic.005G182701 - -
19 Sobic.005G219100 patatin, putative, expressed -
20 Sobic.006G007100 cysteine proteinase At4g11310 precursor, putative, expressed -


Gene co-expression network
sample Sobic002G334500 Sobic002G334500 Sobic009G115400 Sobic009G115400 Sobic002G334500--Sobic009G115400 Sobic009G115300 Sobic009G115300 Sobic002G334500--Sobic009G115300 Sobic006G007650 Sobic006G007650 Sobic002G334500--Sobic006G007650 Sobic002G108400 Sobic002G108400 Sobic002G334500--Sobic002G108400 Sobic002G202700 Sobic002G202700 Sobic002G334500--Sobic002G202700 Sobic006G005500 Sobic006G005500 Sobic002G334500--Sobic006G005500 Sobic001G125700 Sobic001G125700 Sobic002G334500--Sobic001G125700 Sobic001G201800 Sobic001G201800 Sobic002G334500--Sobic001G201800 Sobic007G076000 Sobic007G076000 Sobic002G334500--Sobic007G076000 Sobic009G115400--Sobic001G125700 Sobic009G115400--Sobic006G005500 Sobic009G115400--Sobic007G076000 Sobic007G055600 Sobic007G055600 Sobic009G115400--Sobic007G055600 Sobic005G182701 Sobic005G182701 Sobic009G115400--Sobic005G182701 Sobic006G005400 Sobic006G005400 Sobic009G115400--Sobic006G005400 Sobic009G115400--Sobic001G201800 Sobic005G219000 Sobic005G219000 Sobic009G115400--Sobic005G219000 Sobic005G219100 Sobic005G219100 Sobic009G115400--Sobic005G219100 Sobic009G115300--Sobic005G182701 Sobic009G115300--Sobic007G055600 Sobic009G115300--Sobic007G076000 Sobic001G012000 Sobic001G012000 Sobic009G115300--Sobic001G012000 Sobic009G115300--Sobic009G115400 Sobic009G115300--Sobic006G007650 Sobic001G056400 Sobic001G056400 Sobic009G115300--Sobic001G056400 Sobic009G115300--Sobic006G005500 Sobic009G115300--Sobic001G125700 Sobic008G028600 Sobic008G028600 Sobic006G007650--Sobic008G028600 Sobic006G007650--Sobic006G005500 Sobic006G007650--Sobic007G076000 Sobic002G040400 Sobic002G040400 Sobic006G007650--Sobic002G040400 Sobic006G007650--Sobic001G125700 Sobic006G007650--Sobic005G219000 Sobic006G007650--Sobic007G055600 Sobic002G087500 Sobic002G087500 Sobic006G007650--Sobic002G087500 Sobic002G298400 Sobic002G298400 Sobic006G007650--Sobic002G298400 Sobic002G108400--Sobic002G202700 Sobic002G108400--Sobic009G115400 Sobic002G108400--Sobic006G005400 Sobic002G108400--Sobic001G201800 Sobic006G007100 Sobic006G007100 Sobic002G108400--Sobic006G007100 Sobic010G225500 Sobic010G225500 Sobic002G108400--Sobic010G225500 Sobic006G007600 Sobic006G007600 Sobic002G108400--Sobic006G007600 Sobic005G186500 Sobic005G186500 Sobic002G108400--Sobic005G186500 Sobic002G108400--Sobic006G005500 Sobic002G202700--Sobic002G108400 Sobic002G202700--Sobic009G115400 Sobic002G202700--Sobic001G201800 Sobic002G202700--Sobic009G115300 Sobic002G202700--Sobic010G225500 Sobic002G202700--Sobic001G012000 Sobic002G202700--Sobic006G005400 Sobic002G202700--Sobic006G007650 Sobic002G202700--Sobic006G005500 Sobic006G005500--Sobic001G125700 Sobic006G005500--Sobic005G219000 Sobic006G005500--Sobic008G028600 Sobic006G005500--Sobic005G219100 Sobic006G005500--Sobic007G076000 Sobic006G005500--Sobic002G040400 Sobic006G005500--Sobic007G055600 Sobic006G005500--Sobic006G005400 Sobic006G005500--Sobic006G007650 Sobic001G125700--Sobic006G005500 Sobic001G125700--Sobic005G219000 Sobic001G125700--Sobic005G219100 Sobic001G125700--Sobic008G028600 Sobic001G125700--Sobic007G076000 Sobic001G125700--Sobic002G040400 Sobic001G125700--Sobic006G005400 Sobic001G125700--Sobic007G055600 Sobic001G125700--Sobic006G007100 Sobic004G078600 Sobic004G078600 Sobic001G201800--Sobic004G078600 Sobic001G201800--Sobic009G115400 Sobic002G423600 Sobic002G423600 Sobic001G201800--Sobic002G423600 Sobic001G201800--Sobic001G012000 Sobic009G252100 Sobic009G252100 Sobic001G201800--Sobic009G252100 Sobic001G201800--Sobic002G202700 Sobic006G045000 Sobic006G045000 Sobic001G201800--Sobic006G045000 Sobic001G201800--Sobic001G056400 Sobic001G201800--Sobic002G108400 Sobic007G076000--Sobic007G055600 Sobic007G076000--Sobic005G182701 Sobic007G076000--Sobic006G005500 Sobic007G076000--Sobic001G125700 Sobic007G076000--Sobic002G040400 Sobic007G076000--Sobic008G028600 Sobic009G014600 Sobic009G014600 Sobic007G076000--Sobic009G014600 Sobic007G076000--Sobic005G219000 Sobic007G076000--Sobic006G007650
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.