Gene annotation
Transcriptome id Sobic.002G344400.1
Synonym Sb02g036780
Functional annotation RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed
UniProt C5XBQ3
Pfam PF06830
Panther DB PTHR31656 PTHR31656:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G19430 : late embryogenesis abundant protein-related / LEA protein-related
RAP-DB (Rice) LOC_Os01g73700.1 : RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed
MaizeGDB (Corn) Zm00025a052221 , Zm00025a040983 , Zm00025a002979 , Zm00025a029575 , Zm00025a039058 , Zm00025a025854 , Zm00025a025852 , Zm00025a025851
Brachypodium KQK11723 , KQK11721
Barley HORVU3Hr1G113530.1 , HORVU3Hr1G113430.2 , HORVU3Hr1G113430.1 , HORVU3Hr1G099570.1 , HORVU3Hr1G113530.6 , HORVU3Hr1G113530.4 , HORVU3Hr1G113530.5 , HORVU3Hr1G113530.3
Wheat TraesCSU02G059100 , TraesCS3B02G586400 , TraesCS3D02G461500 , TraesCS3B02G587300 , TraesCS3A02G518700 , TraesCS3B02G512300 , TraesCS3A02G468400 , TraesCS3D02G526100 , TraesCS3D02G526200 , TraesCS3A02G519700 , TraesCS3A02G518800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G087700 glycosyltransferase protein, putative, expressed -
2 Sobic.001G102100 DUF617 domain containing protein, expressed -
3 Sobic.003G153100 polygalacturonase, putative, expressed -
4 Sobic.001G506600 exostosin family domain containing protein, expressed -
5 Sobic.004G251600 leaf senescence related protein, putative, expressed -
6 Sobic.004G094000 cytokinin dehydrogenase precursor, putative, expressed K00279: cytokinin dehydrogenase
7 Sobic.006G117500 polygalacturonase inhibitor 1 precursor, putative, expressed -
8 Sobic.010G274400 reticuline oxidase-like protein precursor, putative, expressed -
9 Sobic.001G506700 exostosin family domain containing protein, expressed -
10 Sobic.010G096700 leaf senescence related protein, putative, expressed -
11 Sobic.007G216001 - -
12 Sobic.002G029600 CBS domain containing membrane protein, putative, expressed K00088: IMPDH, IMP dehydrogenase
13 Sobic.005G066300 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
14 Sobic.002G254900 membrane protein, putative, expressed -
15 Sobic.005G104200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.003G382200 methyltransferase domain containing protein, expressed -
17 Sobic.001G503000 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
18 Sobic.008G023300 stripe rust resistance protein Yr10, putative, expressed -
19 Sobic.008G035700 glycosyltransferase, putative, expressed K08238: xyloglucan 6-xylosyltransferase
20 Sobic.003G287200 WRKY23, expressed -


Gene co-expression network
sample Sobic002G344400 Sobic002G344400 Sobic003G087700 Sobic003G087700 Sobic002G344400--Sobic003G087700 Sobic001G102100 Sobic001G102100 Sobic002G344400--Sobic001G102100 Sobic003G153100 Sobic003G153100 Sobic002G344400--Sobic003G153100 Sobic001G506600 Sobic001G506600 Sobic002G344400--Sobic001G506600 Sobic004G251600 Sobic004G251600 Sobic002G344400--Sobic004G251600 Sobic004G094000 Sobic004G094000 Sobic002G344400--Sobic004G094000 Sobic006G117500 Sobic006G117500 Sobic002G344400--Sobic006G117500 Sobic010G274400 Sobic010G274400 Sobic002G344400--Sobic010G274400 Sobic001G506700 Sobic001G506700 Sobic002G344400--Sobic001G506700 Sobic003G087700--Sobic001G102100 Sobic003G087700--Sobic001G506600 Sobic002G271300 Sobic002G271300 Sobic003G087700--Sobic002G271300 Sobic005G041300 Sobic005G041300 Sobic003G087700--Sobic005G041300 Sobic006G183900 Sobic006G183900 Sobic003G087700--Sobic006G183900 Sobic008G035800 Sobic008G035800 Sobic003G087700--Sobic008G035800 Sobic008G035700 Sobic008G035700 Sobic003G087700--Sobic008G035700 Sobic003G140200 Sobic003G140200 Sobic003G087700--Sobic003G140200 Sobic003G087700--Sobic004G251600 Sobic001G102100--Sobic003G087700 Sobic001G102100--Sobic004G251600 Sobic004G232700 Sobic004G232700 Sobic001G102100--Sobic004G232700 Sobic004G257000 Sobic004G257000 Sobic001G102100--Sobic004G257000 Sobic001G217500 Sobic001G217500 Sobic001G102100--Sobic001G217500 Sobic001G346500 Sobic001G346500 Sobic001G102100--Sobic001G346500 Sobic007G212100 Sobic007G212100 Sobic001G102100--Sobic007G212100 Sobic001G102100--Sobic002G344400 Sobic002G404100 Sobic002G404100 Sobic001G102100--Sobic002G404100 Sobic009G015166 Sobic009G015166 Sobic003G153100--Sobic009G015166 Sobic007G041600 Sobic007G041600 Sobic003G153100--Sobic007G041600 Sobic005G066300 Sobic005G066300 Sobic003G153100--Sobic005G066300 Sobic001G238500 Sobic001G238500 Sobic003G153100--Sobic001G238500 Sobic004G108800 Sobic004G108800 Sobic003G153100--Sobic004G108800 Sobic005G104200 Sobic005G104200 Sobic003G153100--Sobic005G104200 Sobic003G153100--Sobic006G117500 Sobic002G411000 Sobic002G411000 Sobic003G153100--Sobic002G411000 Sobic004G126500 Sobic004G126500 Sobic003G153100--Sobic004G126500 Sobic010G096700 Sobic010G096700 Sobic001G506600--Sobic010G096700 Sobic001G503000 Sobic001G503000 Sobic001G506600--Sobic001G503000 Sobic001G506600--Sobic005G104200 Sobic002G029600 Sobic002G029600 Sobic001G506600--Sobic002G029600 Sobic001G506600--Sobic002G411000 Sobic002G019100 Sobic002G019100 Sobic001G506600--Sobic002G019100 Sobic004G322000 Sobic004G322000 Sobic001G506600--Sobic004G322000 Sobic006G209000 Sobic006G209000 Sobic001G506600--Sobic006G209000 Sobic003G215300 Sobic003G215300 Sobic001G506600--Sobic003G215300 Sobic010G250300 Sobic010G250300 Sobic004G251600--Sobic010G250300 Sobic004G251600--Sobic004G232700 Sobic004G251600--Sobic007G212100 Sobic004G251600--Sobic003G087700 Sobic004G251600--Sobic001G102100 Sobic007G127400 Sobic007G127400 Sobic004G251600--Sobic007G127400 Sobic009G176400 Sobic009G176400 Sobic004G251600--Sobic009G176400 Sobic004G275800 Sobic004G275800 Sobic004G251600--Sobic004G275800 Sobic007G127500 Sobic007G127500 Sobic004G251600--Sobic007G127500 Sobic004G094000--Sobic004G126500 Sobic007G106500 Sobic007G106500 Sobic004G094000--Sobic007G106500 Sobic004G094000--Sobic001G238500 Sobic007G020700 Sobic007G020700 Sobic004G094000--Sobic007G020700 Sobic004G094000--Sobic005G104200 Sobic004G156250 Sobic004G156250 Sobic004G094000--Sobic004G156250 Sobic002G082700 Sobic002G082700 Sobic004G094000--Sobic002G082700 Sobic006G009700 Sobic006G009700 Sobic004G094000--Sobic006G009700 Sobic010G115000 Sobic010G115000 Sobic004G094000--Sobic010G115000 Sobic006G117500--Sobic005G104200 Sobic006G117500--Sobic010G274400 Sobic006G117500--Sobic004G108800 Sobic006G117500--Sobic001G506600 Sobic006G117500--Sobic009G015166 Sobic006G117500--Sobic005G066300 Sobic006G117500--Sobic010G096700 Sobic006G205500 Sobic006G205500 Sobic006G117500--Sobic006G205500 Sobic002G163200 Sobic002G163200 Sobic006G117500--Sobic002G163200 Sobic010G274400--Sobic002G411000 Sobic010G274400--Sobic005G104200 Sobic010G274400--Sobic006G117500 Sobic010G274400--Sobic001G506600 Sobic010G274400--Sobic005G066300 Sobic010G274400--Sobic001G503000 Sobic010G274400--Sobic010G096700 Sobic006G108300 Sobic006G108300 Sobic010G274400--Sobic006G108300 Sobic010G274400--Sobic001G506700 Sobic001G506700--Sobic002G411000 Sobic005G065700 Sobic005G065700 Sobic001G506700--Sobic005G065700 Sobic001G506700--Sobic002G019100 Sobic005G071900 Sobic005G071900 Sobic001G506700--Sobic005G071900 Sobic001G506700--Sobic001G506600 Sobic001G506700--Sobic006G209000 Sobic001G506700--Sobic006G009700 Sobic001G506700--Sobic005G066300 Sobic001G506700--Sobic001G503000
Octagon: transcription factors


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