Gene annotation
Transcriptome id Sobic.003G050100.2,Sobic.003G050100.5,Sobic.003G050100.6
Synonym Sb03g004360
Functional annotation polygalacturonase, putative, expressed
UniProt A0A1B6Q1D7 , A0A1B6Q1K0
Pfam PF00295
Panther DB PTHR31375 PTHR31375:SF42
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004650polygalacturonase activity


Orthologs (automatic annotation)
TAIR AT1G05650 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os01g07790.1 : polygalacturonase, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G050100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G330350 - -
2 Sobic.003G160300 - -
3 Sobic.003G160433 - -
4 Sobic.007G085900 - -
5 Sobic.006G057100 - -
6 Sobic.009G192200 outer membrane protein, OMP85 family, putative, expressed -
7 Sobic.003G218950 - -
8 Sobic.005G216900 DUF538 domain containing protein, putative, expressed -
9 Sobic.002G390200 pentatricopeptide, putative, expressed -
10 Sobic.001G011600 glutathione S-transferase, putative, expressed -
11 Sobic.001G054050 - -
12 Sobic.006G130100 nucleotide-sugar transporter family protein, putative, expressed -
13 Sobic.001G098700 GRAM domain containing protein, expressed -
14 Sobic.003G375400 - -
15 Sobic.006G131700 CRS1/YhbY domain containing protein, putative, expressed -
16 Sobic.003G369533 - -
17 Sobic.001G270800 ras-related protein, putative, expressed K07933: Rab-like protein 3
18 Sobic.008G140050 - -
19 Sobic.003G160400 zinc knuckle family protein, expressed -
20 Sobic.003G113100 OsFBX320 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic003G050100 Sobic003G050100 Sobic003G330350 Sobic003G330350 Sobic003G050100--Sobic003G330350 Sobic003G160300 Sobic003G160300 Sobic003G050100--Sobic003G160300 Sobic003G160433 Sobic003G160433 Sobic003G050100--Sobic003G160433 Sobic007G085900 Sobic007G085900 Sobic003G050100--Sobic007G085900 Sobic006G057100 Sobic006G057100 Sobic003G050100--Sobic006G057100 Sobic009G192200 Sobic009G192200 Sobic003G050100--Sobic009G192200 Sobic003G218950 Sobic003G218950 Sobic003G050100--Sobic003G218950 Sobic005G216900 Sobic005G216900 Sobic003G050100--Sobic005G216900 Sobic002G390200 Sobic002G390200 Sobic003G050100--Sobic002G390200 Sobic001G270800 Sobic001G270800 Sobic003G330350--Sobic001G270800 Sobic003G330350--Sobic003G050100 Sobic006G131700 Sobic006G131700 Sobic003G330350--Sobic006G131700 Sobic003G330350--Sobic003G218950 Sobic001G098700 Sobic001G098700 Sobic003G330350--Sobic001G098700 Sobic004G091900 Sobic004G091900 Sobic003G330350--Sobic004G091900 Sobic003G330350--Sobic006G057100 Sobic003G330350--Sobic009G192200 Sobic001G167000 Sobic001G167000 Sobic003G330350--Sobic001G167000 Sobic003G160300--Sobic003G160433 Sobic003G160300--Sobic002G390200 Sobic003G160300--Sobic007G085900 Sobic003G160400 Sobic003G160400 Sobic003G160300--Sobic003G160400 Sobic008G140050 Sobic008G140050 Sobic003G160300--Sobic008G140050 Sobic003G160300--Sobic005G216900 Sobic001G128000 Sobic001G128000 Sobic003G160300--Sobic001G128000 Sobic002G180732 Sobic002G180732 Sobic003G160300--Sobic002G180732 Sobic001G054050 Sobic001G054050 Sobic003G160300--Sobic001G054050 Sobic003G160433--Sobic003G160300 Sobic003G160433--Sobic002G390200 Sobic003G160433--Sobic007G085900 Sobic003G160433--Sobic001G128000 Sobic003G160433--Sobic005G216900 Sobic003G160433--Sobic002G180732 Sobic003G160433--Sobic003G160400 Sobic003G160433--Sobic001G054050 Sobic003G160433--Sobic008G140050 Sobic007G085900--Sobic003G160300 Sobic007G085900--Sobic003G160433 Sobic007G085900--Sobic009G192200 Sobic007G085900--Sobic003G160400 Sobic007G085900--Sobic008G140050 Sobic007G085900--Sobic006G057100 Sobic007G085900--Sobic001G128000 Sobic007G085900--Sobic002G390200 Sobic007G085900--Sobic001G054050 Sobic006G057100--Sobic003G218950 Sobic003G352000 Sobic003G352000 Sobic006G057100--Sobic003G352000 Sobic006G057100--Sobic007G085900 SobicK029400 SobicK029400 Sobic006G057100--SobicK029400 Sobic006G057100--Sobic006G131700 Sobic003G113100 Sobic003G113100 Sobic006G057100--Sobic003G113100 Sobic003G369533 Sobic003G369533 Sobic006G057100--Sobic003G369533 Sobic006G057100--Sobic003G160400 Sobic010G185250 Sobic010G185250 Sobic006G057100--Sobic010G185250 Sobic009G192200--Sobic007G085900 Sobic009G192200--Sobic006G057100 Sobic009G192200--Sobic003G160300 Sobic004G282933 Sobic004G282933 Sobic009G192200--Sobic004G282933 Sobic009G192200--Sobic008G140050 Sobic009G192200--Sobic003G218950 Sobic009G192200--Sobic003G160433 Sobic009G192200--Sobic006G131700 Sobic009G192200--Sobic003G352000 Sobic003G218950--Sobic006G057100 Sobic003G218950--Sobic003G369533 Sobic003G218950--Sobic003G352000 Sobic003G218950--SobicK029400 Sobic003G218950--Sobic006G131700 Sobic002G165200 Sobic002G165200 Sobic003G218950--Sobic002G165200 Sobic003G218950--Sobic007G085900 Sobic003G218950--Sobic003G113100 Sobic003G169000 Sobic003G169000 Sobic003G218950--Sobic003G169000 Sobic005G216900--Sobic003G160400 Sobic005G216900--Sobic003G160433 Sobic005G216900--Sobic003G160300 Sobic005G216900--Sobic007G085900 Sobic005G216900--Sobic001G128000 Sobic005G216900--Sobic001G054050 Sobic005G216900--Sobic006G057100 Sobic005G216900--Sobic002G390200 Sobic005G216900--SobicK029400 Sobic002G390200--Sobic003G160300 Sobic002G390200--Sobic003G160433 Sobic002G390200--Sobic002G180732 Sobic002G390200--Sobic007G085900 Sobic002G390200--Sobic003G160400 Sobic006G139200 Sobic006G139200 Sobic002G390200--Sobic006G139200 Sobic002G390200--Sobic008G140050 Sobic002G040550 Sobic002G040550 Sobic002G390200--Sobic002G040550 Sobic003G172450 Sobic003G172450 Sobic002G390200--Sobic003G172450
Octagon: transcription factors


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