Gene annotation
Transcriptome id Sobic.001G270800.1
Synonym Sb01g026590, LIP1
Functional annotation ras-related protein, putative, expressed
UniProt C5WP79
Pfam PF00071
Panther DB PTHR24073 PTHR24073:SF492
NCBI CDD KOG0098; GTPase Rab2, small G protein superfamily KOG0394Ras-related GTPase
KEGG Orthology K07933; Rab-like protein 3
Gene Ontology GO:0007264; small GTPase mediated signal transduction GO:0005525GTP binding


Orthologs (automatic annotation)
TAIR AT5G64813 : Ras-related small GTP-binding family protein
RAP-DB (Rice) LOC_Os10g04580.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a017991
Brachypodium PNT67113 , KQJ96128
Barley HORVU1Hr1G045310.1 , HORVU1Hr1G045310.2 , HORVU1Hr1G045310.3 , HORVU1Hr1G045310.4 , HORVU1Hr1G045310.5 , HORVU1Hr1G045310.6 , HORVU1Hr1G045310.7 , HORVU1Hr1G045310.9 , HORVU1Hr1G045310.10 , HORVU1Hr1G045310.11
Wheat TraesCS1A02G172300 , TraesCS1B02G205000 , TraesCS1A02G172300 , TraesCS1D02G166300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G330350 - -
2 Sobic.009G175700 - -
3 Sobic.001G167000 HEAT repeat family protein, putative, expressed K11492: NCAPG2, condensin-2 complex subunit G2
4 Sobic.004G091900 - -
5 Sobic.006G131700 CRS1/YhbY domain containing protein, putative, expressed -
6 Sobic.003G064901 - -
7 Sobic.003G169000 - K02718: photosystem II PsbT protein
8 Sobic.003G233266 - -
9 Sobic.009G101500 - -
10 Sobic.003G050100 polygalacturonase, putative, expressed -
11 Sobic.003G218950 - -
12 Sobic.001G182800 disease resistance RPP13-like protein 1, putative, expressed -
13 Sobic.001G331650 - -
14 Sobic.004G077700 - -
15 Sobic.001G098700 GRAM domain containing protein, expressed -
16 Sobic.004G032200 cytidylyltransferase domain containing protein, expressed K02201: pantetheine-phosphate adenylyltransferase
17 Sobic.003G369533 - -
18 Sobic.001G182700 disease resistance RPP13-like protein 1, putative, expressed -
19 Sobic.007G065000 proton-dependent oligopeptide transport, putative, expressed -
20 Sobic.009G087540 - -


Gene co-expression network
sample Sobic001G270800 Sobic001G270800 Sobic003G330350 Sobic003G330350 Sobic001G270800--Sobic003G330350 Sobic009G175700 Sobic009G175700 Sobic001G270800--Sobic009G175700 Sobic001G167000 Sobic001G167000 Sobic001G270800--Sobic001G167000 Sobic004G091900 Sobic004G091900 Sobic001G270800--Sobic004G091900 Sobic006G131700 Sobic006G131700 Sobic001G270800--Sobic006G131700 Sobic003G064901 Sobic003G064901 Sobic001G270800--Sobic003G064901 Sobic003G169000 Sobic003G169000 Sobic001G270800--Sobic003G169000 Sobic003G233266 Sobic003G233266 Sobic001G270800--Sobic003G233266 Sobic009G101500 Sobic009G101500 Sobic001G270800--Sobic009G101500 Sobic003G330350--Sobic001G270800 Sobic003G050100 Sobic003G050100 Sobic003G330350--Sobic003G050100 Sobic003G330350--Sobic006G131700 Sobic003G218950 Sobic003G218950 Sobic003G330350--Sobic003G218950 Sobic001G098700 Sobic001G098700 Sobic003G330350--Sobic001G098700 Sobic003G330350--Sobic004G091900 Sobic006G057100 Sobic006G057100 Sobic003G330350--Sobic006G057100 Sobic009G192200 Sobic009G192200 Sobic003G330350--Sobic009G192200 Sobic003G330350--Sobic001G167000 Sobic009G175700--Sobic001G270800 Sobic009G175700--Sobic003G330350 Sobic009G175700--Sobic003G233266 Sobic001G331650 Sobic001G331650 Sobic009G175700--Sobic001G331650 Sobic009G087540 Sobic009G087540 Sobic009G175700--Sobic009G087540 Sobic009G175700--Sobic006G131700 Sobic009G175700--Sobic001G098700 Sobic008G040501 Sobic008G040501 Sobic009G175700--Sobic008G040501 Sobic009G175700--Sobic003G169000 Sobic002G012100 Sobic002G012100 Sobic001G167000--Sobic002G012100 Sobic004G242800 Sobic004G242800 Sobic001G167000--Sobic004G242800 Sobic001G167000--Sobic001G270800 Sobic001G182800 Sobic001G182800 Sobic001G167000--Sobic001G182800 Sobic001G167000--Sobic003G330350 Sobic004G299850 Sobic004G299850 Sobic001G167000--Sobic004G299850 Sobic001G167000--Sobic003G064901 Sobic010G196466 Sobic010G196466 Sobic001G167000--Sobic010G196466 Sobic009G102250 Sobic009G102250 Sobic001G167000--Sobic009G102250 Sobic004G091900--Sobic003G064901 Sobic008G007500 Sobic008G007500 Sobic004G091900--Sobic008G007500 Sobic004G091900--Sobic003G330350 Sobic004G091900--Sobic001G270800 Sobic002G087700 Sobic002G087700 Sobic004G091900--Sobic002G087700 Sobic010G065001 Sobic010G065001 Sobic004G091900--Sobic010G065001 Sobic010G193100 Sobic010G193100 Sobic004G091900--Sobic010G193100 Sobic004G091900--Sobic001G098700 Sobic001G011600 Sobic001G011600 Sobic004G091900--Sobic001G011600 Sobic006G131700--Sobic003G218950 Sobic003G113100 Sobic003G113100 Sobic006G131700--Sobic003G113100 Sobic006G131700--Sobic006G057100 Sobic006G131700--Sobic009G101500 Sobic006G131700--Sobic003G330350 Sobic006G131700--Sobic009G192200 Sobic004G337850 Sobic004G337850 Sobic006G131700--Sobic004G337850 Sobic010G035600 Sobic010G035600 Sobic006G131700--Sobic010G035600 Sobic002G165200 Sobic002G165200 Sobic006G131700--Sobic002G165200 Sobic003G064901--Sobic009G102250 Sobic002G138400 Sobic002G138400 Sobic003G064901--Sobic002G138400 Sobic003G064901--Sobic004G091900 Sobic003G064901--Sobic001G270800 Sobic003G064901--Sobic001G167000 Sobic001G182700 Sobic001G182700 Sobic003G064901--Sobic001G182700 Sobic004G032200 Sobic004G032200 Sobic003G064901--Sobic004G032200 Sobic007G137501 Sobic007G137501 Sobic003G064901--Sobic007G137501 Sobic003G064901--Sobic001G182800 Sobic003G169100 Sobic003G169100 Sobic003G169000--Sobic003G169100 Sobic007G065000 Sobic007G065000 Sobic003G169000--Sobic007G065000 Sobic007G149200 Sobic007G149200 Sobic003G169000--Sobic007G149200 Sobic003G352000 Sobic003G352000 Sobic003G169000--Sobic003G352000 Sobic003G369533 Sobic003G369533 Sobic003G169000--Sobic003G369533 Sobic003G168200 Sobic003G168200 Sobic003G169000--Sobic003G168200 SobicK029400 SobicK029400 Sobic003G169000--SobicK029400 Sobic007G145801 Sobic007G145801 Sobic003G169000--Sobic007G145801 Sobic003G169000--Sobic003G218950 Sobic003G233266--Sobic001G331650 Sobic003G233266--Sobic008G040501 Sobic004G207800 Sobic004G207800 Sobic003G233266--Sobic004G207800 Sobic003G233266--Sobic003G169000 Sobic003G233266--Sobic009G101500 Sobic001G300301 Sobic001G300301 Sobic003G233266--Sobic001G300301 Sobic001G048500 Sobic001G048500 Sobic003G233266--Sobic001G048500 Sobic001G502801 Sobic001G502801 Sobic003G233266--Sobic001G502801 Sobic004G077700 Sobic004G077700 Sobic003G233266--Sobic004G077700 Sobic009G101500--Sobic004G077700 Sobic005G139750 Sobic005G139750 Sobic009G101500--Sobic005G139750 Sobic001G022700 Sobic001G022700 Sobic009G101500--Sobic001G022700 Sobic009G101500--Sobic006G131700 Sobic009G101500--Sobic007G145801 Sobic001G094550 Sobic001G094550 Sobic009G101500--Sobic001G094550 Sobic009G101500--Sobic004G337850 Sobic009G101500--Sobic001G182700 Sobic009G101500--Sobic001G182800
Octagon: transcription factors


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