Gene annotation
| Transcriptome id | Sobic.003G082500.1 |
|---|---|
| Synonym | HSP18.2, Sb03g006920 |
| Functional annotation | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543) Up-reguralion under heat (PubMedID : 24916767) Up-reguralion under combine stress of drought and heat (PubMedID : 24916767) hsp20/alpha crystallin family protein, putative, expressed |
| UniProt | C5XQS5 |
| Pfam | PF00011 |
| Panther DB | PTHR11527 PTHR11527:SF123 |
| NCBI CDD | - |
| KEGG Orthology | K13993; HSP20 family protein |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G07400 : HSP20-like chaperones superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os01g04340.1 : hsp20/alpha crystallin family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a023564 , Zm00025a023567 , Zm00025a023554 , Zm00025a023555 , Zm00025a023557 , Zm00025a035577 |
| Brachypodium | KQK04325 , KQJ88772 , KQK02573 , KQK02572 , KQK22411 , KQK22418 , KQK20327 |
| Barley | HORVU2Hr1G120170.1 , HORVU3Hr1G007380.1 , HORVU3Hr1G007500.1 , HORVU3Hr1G007500.2 , HORVU3Hr1G007500.4 , HORVU3Hr1G007500.6 |
| Wheat | TraesCS7D02G185500 , TraesCS7A02G183800 , TraesCS7B02G088700 , TraesCS7D02G185600 , TraesCS7B02G088600 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G116100 | inorganic phosphate transporter, putative, expressed | K08176: MFS transporter, PHS family, inorganic phosphate transporter |
| 2 | Sobic.007G181500 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Dehydration-responsive element binding 1 A(PubMedID : 26320239)@Up-reguralion under heat(PubMedID : 24916767)@Not investigated(PubMedID : 23766026)@dehydration-responsive element-binding protein, putative, expressed | - |
| 3 | Sobic.004G247650 | - | - |
| 4 | Sobic.010G196600 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 5 | Sobic.007G176600 | expressed protein | - |
| 6 | Sobic.001G425500 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 7 | Sobic.001G425600 | "similar to 17.4 kDa class I heat shock protein 3, maped into a unique stay green QTL (QSTG11_1) involved in drought tolerance."(PubMedID : 24655390)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@similar to 17.4 kDa class I heat shock protein 3(PubMedID : 24655390)@similar to 17.4kDa class I heat shock protein 3(PubMedID : 24655390)@similar to 17.4kDa class I heat shock protein 3(PubMedID : 24655390)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 8 | Sobic.010G084600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed | K05894: 12-oxophytodienoic acid reductase |
| 9 | Sobic.009G194400 | expressed protein | - |
| 10 | Sobic.003G307300 | - | - |
| 11 | Sobic.006G207000 | expressed protein | - |
| 12 | Sobic.004G127200 | glycosyl hydrolases family 16, putative, expressed | - |
| 13 | Sobic.001G279701 | - | - |
| 14 | Sobic.001G100600 | expressed protein | - |
| 15 | Sobic.002G369301 | - | - |
| 16 | Sobic.004G092800 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 17 | Sobic.004G109700 | zinc finger, C3HC4 type domain containing protein, expressed | - |
| 18 | Sobic.004G115500 | expressed protein | - |
| 19 | Sobic.002G100832 | - | - |
| 20 | Sobic.003G370600 | hydrolase, alpha/beta fold family domain containing protein, expressed | K07019: uncharacterized protein |
Gene co-expression network
Octagon: transcription factors
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