Gene annotation
Transcriptome id Sobic.007G181500.1
Synonym (SbDREB1);dehydration response element binding (DREB) transcription factor, ATCBF3, CBF3, DREB1A, dehydration response element binding (DREB) transcription factor, SbERF85, Sb07g025210, (SbDREB1);DREB1A;DREB1A;ethylene response factor 85
Functional annotation "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. " (PubMedID : 24086146)
SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
Dehydration-responsive element binding 1 A (PubMedID : 26320239)
Up-reguralion under heat (PubMedID : 24916767)
Not investigated (PubMedID : 23766026)
dehydration-responsive element-binding protein, putative, expressed
UniProt C5YH67
Pfam PF00847
Panther DB PTHR31839 PTHR31839:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT5G51990 : C-repeat-binding factor 4
RAP-DB (Rice) LOC_Os08g43200.1 : dehydration-responsive element-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a047706 , Zm00025a047704
Brachypodium KQJ91109 , KQK01656
Barley HORVU6Hr1G089320.1 , HORVU5Hr1G080450.1 , HORVU5Hr1G080450.2 , HORVU5Hr1G080340.1 , HORVU5Hr1G080340.2
Wheat TraesCS5B02G310900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G425600 "similar to 17.4 kDa class I heat shock protein 3, maped into a unique stay green QTL (QSTG11_1) involved in drought tolerance."(PubMedID : 24655390)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@similar to 17.4 kDa class I heat shock protein 3(PubMedID : 24655390)@similar to 17.4kDa class I heat shock protein 3(PubMedID : 24655390)@similar to 17.4kDa class I heat shock protein 3(PubMedID : 24655390)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
2 Sobic.001G425500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
3 Sobic.004G109700 zinc finger, C3HC4 type domain containing protein, expressed -
4 Sobic.009G194400 expressed protein -
5 Sobic.003G323201 - -
6 Sobic.010G196600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.004G109600 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.001G279350 - -
9 Sobic.002G250900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.001G143100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, expressed -
11 Sobic.001G481300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
12 Sobic.002G395300 gibberellin receptor GID1L2, putative, expressed -
13 Sobic.010G198500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.004G308900 AP2 domain containing protein, expressed -
15 Sobic.002G388900 Upregulated in cold tolerant sorghum under stress(PubMedID : 26645959)@cytochrome P450 72A1, putative, expressed -
16 Sobic.003G370600 hydrolase, alpha/beta fold family domain containing protein, expressed K07019: uncharacterized protein
17 Sobic.006G207000 expressed protein -
18 Sobic.007G214600 EF hand family protein, putative, expressed -
19 Sobic.002G388800 cytochrome P450 72A1, putative, expressed -
20 Sobic.004G280000 Hydroxyjasmonate sulfotransferase (At)(PubMedID : 27208977)@sulfotransferase domain containing protein, expressed -


Gene co-expression network
sample Sobic007G181500 Sobic007G181500 Sobic001G425600 Sobic001G425600 Sobic007G181500--Sobic001G425600 Sobic001G425500 Sobic001G425500 Sobic007G181500--Sobic001G425500 Sobic004G109700 Sobic004G109700 Sobic007G181500--Sobic004G109700 Sobic009G194400 Sobic009G194400 Sobic007G181500--Sobic009G194400 Sobic003G323201 Sobic003G323201 Sobic007G181500--Sobic003G323201 Sobic010G196600 Sobic010G196600 Sobic007G181500--Sobic010G196600 Sobic004G109600 Sobic004G109600 Sobic007G181500--Sobic004G109600 Sobic001G279350 Sobic001G279350 Sobic007G181500--Sobic001G279350 Sobic002G250900 Sobic002G250900 Sobic007G181500--Sobic002G250900 Sobic001G425600--Sobic001G425500 Sobic001G425600--Sobic004G109700 Sobic004G273300 Sobic004G273300 Sobic001G425600--Sobic004G273300 Sobic001G425600--Sobic009G194400 Sobic001G425600--Sobic004G109600 Sobic001G481300 Sobic001G481300 Sobic001G425600--Sobic001G481300 Sobic001G425600--Sobic010G196600 Sobic001G425600--Sobic001G279350 Sobic001G425600--Sobic003G323201 Sobic001G425500--Sobic001G425600 Sobic001G425500--Sobic004G109700 Sobic001G425500--Sobic009G194400 Sobic001G425500--Sobic010G196600 Sobic001G425500--Sobic004G273300 Sobic001G425500--Sobic003G323201 Sobic004G092800 Sobic004G092800 Sobic001G425500--Sobic004G092800 Sobic001G425500--Sobic004G109600 Sobic001G425500--Sobic001G481300 Sobic004G109700--Sobic004G109600 Sobic004G109700--Sobic001G425600 Sobic004G109700--Sobic001G425500 Sobic004G109700--Sobic001G481300 Sobic004G109700--Sobic010G196600 Sobic004G109700--Sobic009G194400 Sobic004G109700--Sobic003G323201 Sobic007G214600 Sobic007G214600 Sobic004G109700--Sobic007G214600 Sobic004G109700--Sobic001G279350 Sobic009G194400--Sobic010G196600 Sobic009G194400--Sobic001G425500 Sobic009G194400--Sobic003G323201 Sobic009G194400--Sobic001G425600 Sobic003G370600 Sobic003G370600 Sobic009G194400--Sobic003G370600 Sobic009G194400--Sobic004G109700 Sobic004G097100 Sobic004G097100 Sobic009G194400--Sobic004G097100 Sobic002G388900 Sobic002G388900 Sobic009G194400--Sobic002G388900 Sobic009G194400--Sobic004G092800 Sobic003G323201--Sobic009G194400 Sobic003G323201--Sobic010G196600 Sobic003G323201--Sobic001G425500 Sobic003G323201--Sobic004G109700 Sobic003G323201--Sobic001G425600 Sobic004G308900 Sobic004G308900 Sobic003G323201--Sobic004G308900 Sobic003G323201--Sobic004G109600 Sobic003G323201--Sobic002G388900 Sobic009G144700 Sobic009G144700 Sobic003G323201--Sobic009G144700 Sobic010G196600--Sobic009G194400 Sobic010G196600--Sobic001G425500 Sobic010G196600--Sobic004G109700 Sobic004G283500 Sobic004G283500 Sobic010G196600--Sobic004G283500 Sobic010G196600--Sobic002G388900 Sobic010G196600--Sobic003G323201 Sobic008G187001 Sobic008G187001 Sobic010G196600--Sobic008G187001 Sobic010G196600--Sobic001G425600 Sobic010G196600--Sobic004G109600 Sobic004G109600--Sobic001G481300 Sobic003G355100 Sobic003G355100 Sobic004G109600--Sobic003G355100 Sobic004G109600--Sobic007G214600 Sobic004G109600--Sobic004G109700 Sobic003G197200 Sobic003G197200 Sobic004G109600--Sobic003G197200 Sobic010G198500 Sobic010G198500 Sobic004G109600--Sobic010G198500 Sobic003G148600 Sobic003G148600 Sobic004G109600--Sobic003G148600 Sobic001G371800 Sobic001G371800 Sobic004G109600--Sobic001G371800 Sobic001G201200 Sobic001G201200 Sobic004G109600--Sobic001G201200 Sobic001G279350--Sobic001G481300 Sobic001G279350--Sobic004G109600 Sobic007G147700 Sobic007G147700 Sobic001G279350--Sobic007G147700 Sobic001G279350--Sobic003G355100 Sobic001G279350--Sobic001G425600 Sobic001G279350--Sobic004G109700 Sobic001G279350--Sobic003G197200 Sobic001G279350--Sobic001G425500 Sobic001G279350--Sobic007G214600 Sobic002G388800 Sobic002G388800 Sobic002G250900--Sobic002G388800 Sobic002G250900--Sobic009G194400 Sobic001G143100 Sobic001G143100 Sobic002G250900--Sobic001G143100 Sobic003G060100 Sobic003G060100 Sobic002G250900--Sobic003G060100 Sobic002G250900--Sobic003G370600 Sobic002G269100 Sobic002G269100 Sobic002G250900--Sobic002G269100 Sobic002G250900--Sobic004G097100 Sobic002G250900--Sobic004G092800 Sobic001G065900 Sobic001G065900 Sobic002G250900--Sobic001G065900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.