Gene annotation
Transcriptome id Sobic.004G247650.1
Synonym -
Functional annotation -
UniProt A0A1Z5RPT6
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G086600 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
2 Sobic.003G394400 ubiquitin family protein, putative, expressed -
3 Sobic.007G214400 EF hand family protein, putative, expressed -
4 Sobic.004G166200 expressed protein -
5 Sobic.002G068600 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
6 Sobic.003G355100 expressed protein -
7 Sobic.001G107800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.001G254100 "PGL1(Ortholog in rice:Heang and Sassa, 2012)"(PubMedID : 31659838)@bHLH family protein, putative, expressed -
9 Sobic.001G371800 expressed protein -
10 Sobic.001G149800 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
11 Sobic.001G405500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate decarboxylase isozyme 2, putative, expressed K01568: PDC, pyruvate decarboxylase
12 Sobic.010G032100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed -
13 Sobic.007G214600 EF hand family protein, putative, expressed -
14 Sobic.003G148600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
15 Sobic.002G361100 similar to Glutathione transferase(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
16 Sobic.009G169000 thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed K01568: PDC, pyruvate decarboxylase
17 Sobic.001G397200 universal stress protein domain containing protein, putative, expressed -
18 Sobic.001G387900 Chaperone - similar to Cluster: DnaJ domain containing protein(PubMedID : 24655390)@ Oryza sativa(PubMedID : 27586543)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 24655390)@chaperone protein dnaJ, putative, expressed -
19 Sobic.001G108200 expressed protein -
20 Sobic.002G389000 cytochrome P450 72A1, putative, expressed -


Gene co-expression network
sample Sobic004G247650 Sobic004G247650 Sobic003G086600 Sobic003G086600 Sobic004G247650--Sobic003G086600 Sobic003G394400 Sobic003G394400 Sobic004G247650--Sobic003G394400 Sobic007G214400 Sobic007G214400 Sobic004G247650--Sobic007G214400 Sobic004G166200 Sobic004G166200 Sobic004G247650--Sobic004G166200 Sobic002G068600 Sobic002G068600 Sobic004G247650--Sobic002G068600 Sobic003G355100 Sobic003G355100 Sobic004G247650--Sobic003G355100 Sobic001G107800 Sobic001G107800 Sobic004G247650--Sobic001G107800 Sobic001G254100 Sobic001G254100 Sobic004G247650--Sobic001G254100 Sobic001G371800 Sobic001G371800 Sobic004G247650--Sobic001G371800 Sobic003G086600--Sobic002G068600 Sobic003G086600--Sobic003G394400 Sobic001G405500 Sobic001G405500 Sobic003G086600--Sobic001G405500 Sobic001G108200 Sobic001G108200 Sobic003G086600--Sobic001G108200 Sobic003G086600--Sobic004G166200 Sobic003G382800 Sobic003G382800 Sobic003G086600--Sobic003G382800 Sobic003G086600--Sobic003G355100 Sobic001G397200 Sobic001G397200 Sobic003G086600--Sobic001G397200 Sobic007G026600 Sobic007G026600 Sobic003G086600--Sobic007G026600 Sobic003G394400--Sobic002G068600 Sobic003G394400--Sobic007G214400 Sobic003G394400--Sobic003G086600 Sobic003G394400--Sobic001G371800 Sobic003G394400--Sobic004G166200 Sobic003G394400--Sobic001G107800 Sobic003G394400--Sobic003G355100 Sobic003G148600 Sobic003G148600 Sobic003G394400--Sobic003G148600 Sobic007G214600 Sobic007G214600 Sobic003G394400--Sobic007G214600 Sobic007G214400--Sobic003G394400 Sobic007G214400--Sobic001G371800 Sobic002G389000 Sobic002G389000 Sobic007G214400--Sobic002G389000 Sobic007G214400--Sobic001G107800 Sobic007G214400--Sobic002G068600 Sobic007G214400--Sobic001G254100 Sobic002G261200 Sobic002G261200 Sobic007G214400--Sobic002G261200 Sobic007G214400--Sobic003G086600 Sobic007G214400--Sobic007G214600 Sobic004G166200--Sobic003G394400 Sobic004G166200--Sobic002G068600 Sobic004G166200--Sobic003G148600 Sobic004G166200--Sobic001G371800 Sobic004G166200--Sobic007G214600 Sobic004G166200--Sobic001G107800 Sobic004G166200--Sobic003G355100 Sobic004G166200--Sobic003G382800 Sobic003G197200 Sobic003G197200 Sobic004G166200--Sobic003G197200 Sobic002G068600--Sobic003G394400 Sobic002G068600--Sobic003G086600 Sobic002G068600--Sobic004G166200 Sobic002G068600--Sobic001G254100 Sobic002G068600--Sobic001G107800 Sobic002G068600--Sobic002G261200 Sobic002G068600--Sobic007G026600 Sobic002G068600--Sobic007G214400 Sobic010G032100 Sobic010G032100 Sobic002G068600--Sobic010G032100 Sobic003G355100--Sobic007G214600 Sobic003G355100--Sobic003G197200 Sobic001G481300 Sobic001G481300 Sobic003G355100--Sobic001G481300 Sobic003G355100--Sobic003G148600 Sobic004G109600 Sobic004G109600 Sobic003G355100--Sobic004G109600 Sobic003G355100--Sobic003G394400 Sobic003G355100--Sobic001G108200 Sobic003G144700 Sobic003G144700 Sobic003G355100--Sobic003G144700 Sobic003G355100--Sobic004G166200 Sobic003G123600 Sobic003G123600 Sobic001G107800--Sobic003G123600 Sobic001G107800--Sobic003G394400 Sobic001G107800--Sobic007G214400 Sobic001G107800--Sobic003G148600 Sobic001G107800--Sobic002G261200 Sobic001G107800--Sobic001G371800 Sobic001G107800--Sobic001G254100 Sobic001G107800--Sobic003G197200 Sobic001G107800--Sobic002G068600 Sobic001G254100--Sobic002G068600 Sobic001G254100--Sobic001G107800 Sobic001G254100--Sobic003G394400 Sobic001G254100--Sobic002G261200 Sobic001G254100--Sobic004G166200 Sobic001G149800 Sobic001G149800 Sobic001G254100--Sobic001G149800 Sobic001G254100--Sobic007G214400 Sobic001G254100--Sobic002G389000 Sobic001G254100--Sobic003G086600 Sobic001G371800--Sobic007G214400 Sobic001G371800--Sobic003G394400 Sobic001G201200 Sobic001G201200 Sobic001G371800--Sobic001G201200 Sobic001G371800--Sobic002G389000 Sobic001G371800--Sobic004G166200 Sobic001G371800--Sobic001G107800 Sobic001G371800--Sobic007G214600 Sobic001G371800--Sobic003G197200 Sobic001G371800--Sobic003G148600
Octagon: transcription factors


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