Gene annotation
Transcriptome id Sobic.003G102300.1
Synonym Sb03g008570
Functional annotation helix-loop-helix DNA-binding domain containing protein, expressed
UniProt A0A1B6Q2F7
Pfam PF00010
Panther DB PTHR13935 PTHR13935:SF52
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT4G20970 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os01g01840.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a023788
Brachypodium KQK02310 , PNT69807
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G129100 O-methyltransferase, putative, expressed -
2 Sobic.009G075201 - -
3 Sobic.008G039300 cytochrome P450, putative, expressed -
4 Sobic.005G193600 3 Ketoacyl CoA synthetase 2 KCS2 (fatty acid elongase) (At)(PubMedID : 27208977)@3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
5 Sobic.007G202700 exo70 exocyst complex subunit, putative, expressed -
6 Sobic.001G012000 cytochrome P450 71E1, putative, expressed K13029: 4-hydroxyphenylacetaldehyde oxime monooxygenase
7 Sobic.003G076800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AP2/B3 transcription factor(PubMedID : 27016024)@cytochrome P450, putative, expressed -
8 Sobic.003G037100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.008G181801 - -
10 Sobic.006G229500 receptor-like kinase, putative, expressed -
11 Sobic.K044407 - -
12 Sobic.010G045000 VQ domain containing protein, putative -
13 Sobic.009G252100 expressed protein -
14 Sobic.009G115400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.001G201800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
16 Sobic.005G186500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSCP1 - Putative Serine Carboxypeptidase homologue, expressed K08249: hydroxymandelonitrile lyase
17 Sobic.006G045000 drought-induced protein 1, putative, expressed -
18 Sobic.002G108400 cytochrome P450, putative, expressed -
19 Sobic.003G298500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@O-methyltransferase, putative, expressed -
20 Sobic.006G003700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic003G102300 Sobic003G102300 Sobic005G129100 Sobic005G129100 Sobic003G102300--Sobic005G129100 Sobic009G075201 Sobic009G075201 Sobic003G102300--Sobic009G075201 Sobic008G039300 Sobic008G039300 Sobic003G102300--Sobic008G039300 Sobic005G193600 Sobic005G193600 Sobic003G102300--Sobic005G193600 Sobic007G202700 Sobic007G202700 Sobic003G102300--Sobic007G202700 Sobic001G012000 Sobic001G012000 Sobic003G102300--Sobic001G012000 Sobic003G076800 Sobic003G076800 Sobic003G102300--Sobic003G076800 Sobic003G037100 Sobic003G037100 Sobic003G102300--Sobic003G037100 Sobic008G181801 Sobic008G181801 Sobic003G102300--Sobic008G181801 Sobic005G129100--Sobic003G102300 Sobic004G091700 Sobic004G091700 Sobic005G129100--Sobic004G091700 Sobic003G047600 Sobic003G047600 Sobic005G129100--Sobic003G047600 Sobic005G098501 Sobic005G098501 Sobic005G129100--Sobic005G098501 Sobic001G471150 Sobic001G471150 Sobic005G129100--Sobic001G471150 Sobic005G129100--Sobic007G202700 Sobic002G195066 Sobic002G195066 Sobic005G129100--Sobic002G195066 Sobic003G298500 Sobic003G298500 Sobic005G129100--Sobic003G298500 Sobic003G372750 Sobic003G372750 Sobic005G129100--Sobic003G372750 Sobic009G075201--Sobic003G102300 Sobic009G152400 Sobic009G152400 Sobic009G075201--Sobic009G152400 Sobic008G060200 Sobic008G060200 Sobic009G075201--Sobic008G060200 Sobic008G137800 Sobic008G137800 Sobic009G075201--Sobic008G137800 Sobic007G037800 Sobic007G037800 Sobic009G075201--Sobic007G037800 Sobic009G075201--Sobic008G039300 Sobic009G252100 Sobic009G252100 Sobic009G075201--Sobic009G252100 Sobic009G075201--Sobic005G129100 Sobic004G358500 Sobic004G358500 Sobic009G075201--Sobic004G358500 Sobic002G087500 Sobic002G087500 Sobic008G039300--Sobic002G087500 Sobic002G040400 Sobic002G040400 Sobic008G039300--Sobic002G040400 Sobic002G298400 Sobic002G298400 Sobic008G039300--Sobic002G298400 Sobic008G028600 Sobic008G028600 Sobic008G039300--Sobic008G028600 Sobic002G391700 Sobic002G391700 Sobic008G039300--Sobic002G391700 Sobic004G143801 Sobic004G143801 Sobic008G039300--Sobic004G143801 Sobic007G076000 Sobic007G076000 Sobic008G039300--Sobic007G076000 Sobic002G093600 Sobic002G093600 Sobic008G039300--Sobic002G093600 Sobic006G005500 Sobic006G005500 Sobic008G039300--Sobic006G005500 Sobic005G193600--Sobic009G252100 Sobic008G060300 Sobic008G060300 Sobic005G193600--Sobic008G060300 Sobic005G193600--Sobic001G012000 Sobic001G201800 Sobic001G201800 Sobic005G193600--Sobic001G201800 Sobic005G193600--Sobic008G181801 Sobic006G229500 Sobic006G229500 Sobic005G193600--Sobic006G229500 SobicK044407 SobicK044407 Sobic005G193600--SobicK044407 Sobic001G381300 Sobic001G381300 Sobic005G193600--Sobic001G381300 Sobic005G193500 Sobic005G193500 Sobic005G193600--Sobic005G193500 Sobic007G202700--Sobic003G298500 Sobic002G013500 Sobic002G013500 Sobic007G202700--Sobic002G013500 Sobic010G266000 Sobic010G266000 Sobic007G202700--Sobic010G266000 Sobic001G489225 Sobic001G489225 Sobic007G202700--Sobic001G489225 Sobic003G432600 Sobic003G432600 Sobic007G202700--Sobic003G432600 Sobic002G277900 Sobic002G277900 Sobic007G202700--Sobic002G277900 Sobic001G482500 Sobic001G482500 Sobic007G202700--Sobic001G482500 Sobic008G024000 Sobic008G024000 Sobic007G202700--Sobic008G024000 Sobic010G091750 Sobic010G091750 Sobic007G202700--Sobic010G091750 Sobic001G012000--SobicK044407 Sobic001G056400 Sobic001G056400 Sobic001G012000--Sobic001G056400 Sobic006G045000 Sobic006G045000 Sobic001G012000--Sobic006G045000 Sobic005G182701 Sobic005G182701 Sobic001G012000--Sobic005G182701 Sobic009G115300 Sobic009G115300 Sobic001G012000--Sobic009G115300 Sobic002G423600 Sobic002G423600 Sobic001G012000--Sobic002G423600 Sobic001G012000--Sobic008G181801 Sobic003G310200 Sobic003G310200 Sobic001G012000--Sobic003G310200 Sobic009G115400 Sobic009G115400 Sobic001G012000--Sobic009G115400 Sobic003G076800--Sobic003G298500 Sobic005G190700 Sobic005G190700 Sobic003G076800--Sobic005G190700 Sobic004G036500 Sobic004G036500 Sobic003G076800--Sobic004G036500 Sobic007G129900 Sobic007G129900 Sobic003G076800--Sobic007G129900 Sobic010G178050 Sobic010G178050 Sobic003G076800--Sobic010G178050 Sobic003G245201 Sobic003G245201 Sobic003G076800--Sobic003G245201 Sobic003G076800--Sobic002G277900 Sobic003G008100 Sobic003G008100 Sobic003G076800--Sobic003G008100 Sobic002G063201 Sobic002G063201 Sobic003G076800--Sobic002G063201 Sobic005G226100 Sobic005G226100 Sobic003G037100--Sobic005G226100 Sobic002G269032 Sobic002G269032 Sobic003G037100--Sobic002G269032 Sobic003G037100--Sobic008G181801 Sobic009G241500 Sobic009G241500 Sobic003G037100--Sobic009G241500 Sobic001G259500 Sobic001G259500 Sobic003G037100--Sobic001G259500 Sobic008G181801--SobicK044407 Sobic008G181801--Sobic009G241500 Sobic008G181801--Sobic001G012000 Sobic008G181801--Sobic006G045000 Sobic008G181801--Sobic005G226100 Sobic005G085500 Sobic005G085500 Sobic008G181801--Sobic005G085500 Sobic008G181801--Sobic003G310200 Sobic005G082700 Sobic005G082700 Sobic008G181801--Sobic005G082700 Sobic008G181801--Sobic003G037100
Octagon: transcription factors


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