Gene annotation
Transcriptome id Sobic.003G207500.5,Sobic.003G207500.3,Sobic.003G207500.8,Sobic.003G207500.4,Sobic.003G207500.2,Sobic.003G207500.7,Sobic.003G207500.6
Synonym ATSPP, SPP
Functional annotation signal peptide peptidase domain containing protein, expressed
UniProt A0A1W0VYB8 , A0A1W0VYB1 , A0A1W0VYD0 , A0A1W0VYC0
Pfam PF04258
Panther DB PTHR12174 PTHR12174:SF23
NCBI CDD KOG2443; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0004190aspartic-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT2G03120 : signal peptide peptidase
RAP-DB (Rice) LOC_Os05g36070.1,LOC_Os05g36070.3 : signal peptide peptidase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a035047
Brachypodium KQK24085
Barley HORVU3Hr1G108010.9 , HORVU3Hr1G108010.8 , HORVU3Hr1G108010.1 , HORVU3Hr1G108010.3 , HORVU3Hr1G108010.2 , HORVU3Hr1G108010.5 , HORVU3Hr1G108010.4 , HORVU3Hr1G108010.7 , HORVU3Hr1G108010.6 , HORVU3Hr1G108010.10
Wheat TraesCS1A02G272700 , TraesCS3B02G545500 , TraesCS3D02G492200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G163001 - -
2 Sobic.004G111300 - -
3 Sobic.005G145550 - -
4 Sobic.007G188800 "Candidate orthologue to the wheat Pm40 gene, Disease resistance RGA1"(PubMedID : 27755575)@CC-NBS-LRR, putative, expressed -
5 Sobic.003G251100 - -
6 Sobic.001G475100 expressed protein -
7 Sobic.008G111200 - -
8 Sobic.005G102900 NBS-LRR disease resistance protein, putative, expressed -
9 Sobic.004G324700 - -
10 Sobic.010G214500 purple acid phosphatase, putative, expressed -
11 Sobic.010G135250 - -
12 Sobic.007G185300 - -
13 Sobic.002G031900 RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed -
14 Sobic.002G424700 ATPOT1, putative, expressed -
15 Sobic.006G268600 SAR DNA-binding protein-like, putative, expressed -
16 Sobic.003G179350 - -
17 Sobic.005G189300 - -
18 Sobic.001G519900 ribonuclease protein, putative, expressed K12585: DIS3, exosome complex exonuclease DIS3/RRP44
19 Sobic.005G188300 expressed protein -
20 Sobic.001G145000 expressed protein K14376: poly(A) polymerase


Gene co-expression network
sample Sobic003G207500 Sobic003G207500 Sobic007G163001 Sobic007G163001 Sobic003G207500--Sobic007G163001 Sobic004G111300 Sobic004G111300 Sobic003G207500--Sobic004G111300 Sobic005G145550 Sobic005G145550 Sobic003G207500--Sobic005G145550 Sobic007G188800 Sobic007G188800 Sobic003G207500--Sobic007G188800 Sobic003G251100 Sobic003G251100 Sobic003G207500--Sobic003G251100 Sobic001G475100 Sobic001G475100 Sobic003G207500--Sobic001G475100 Sobic008G111200 Sobic008G111200 Sobic003G207500--Sobic008G111200 Sobic005G102900 Sobic005G102900 Sobic003G207500--Sobic005G102900 Sobic004G324700 Sobic004G324700 Sobic003G207500--Sobic004G324700 Sobic007G163001--Sobic003G207500 Sobic007G163001--Sobic005G145550 Sobic007G163001--Sobic003G251100 Sobic007G163001--Sobic007G188800 Sobic007G163001--Sobic004G324700 Sobic010G214500 Sobic010G214500 Sobic007G163001--Sobic010G214500 Sobic007G163001--Sobic001G475100 Sobic007G163001--Sobic008G111200 Sobic002G031900 Sobic002G031900 Sobic007G163001--Sobic002G031900 Sobic004G111300--Sobic003G207500 Sobic003G179350 Sobic003G179350 Sobic004G111300--Sobic003G179350 Sobic007G185300 Sobic007G185300 Sobic004G111300--Sobic007G185300 Sobic004G111300--Sobic007G163001 Sobic004G111300--Sobic005G145550 Sobic003G166200 Sobic003G166200 Sobic004G111300--Sobic003G166200 Sobic003G219200 Sobic003G219200 Sobic004G111300--Sobic003G219200 Sobic004G111300--Sobic004G324700 Sobic007G007200 Sobic007G007200 Sobic004G111300--Sobic007G007200 Sobic005G189300 Sobic005G189300 Sobic005G145550--Sobic005G189300 Sobic005G145550--Sobic007G163001 Sobic005G145550--Sobic004G324700 Sobic005G145550--Sobic001G475100 Sobic005G145550--Sobic003G207500 Sobic005G145550--Sobic002G031900 Sobic005G145550--Sobic007G188800 Sobic005G145550--Sobic003G179350 Sobic005G145550--Sobic004G111300 Sobic007G188800--Sobic007G163001 Sobic007G188800--Sobic003G207500 Sobic007G188800--Sobic005G145550 Sobic007G188800--Sobic003G251100 Sobic010G273300 Sobic010G273300 Sobic007G188800--Sobic010G273300 Sobic007G188800--Sobic001G475100 Sobic007G188800--Sobic005G102900 Sobic007G188800--Sobic010G214500 Sobic007G188800--Sobic005G189300 Sobic003G251100--Sobic007G163001 Sobic003G251100--Sobic003G207500 Sobic003G251100--Sobic007G188800 Sobic010G135250 Sobic010G135250 Sobic003G251100--Sobic010G135250 Sobic003G251100--Sobic001G475100 Sobic006G268600 Sobic006G268600 Sobic003G251100--Sobic006G268600 Sobic003G251100--Sobic005G102900 Sobic003G251100--Sobic005G145550 Sobic009G014332 Sobic009G014332 Sobic003G251100--Sobic009G014332 Sobic001G475100--Sobic005G145550 Sobic005G188300 Sobic005G188300 Sobic001G475100--Sobic005G188300 Sobic001G475100--Sobic007G163001 Sobic006G057600 Sobic006G057600 Sobic001G475100--Sobic006G057600 Sobic001G475100--Sobic003G207500 Sobic001G475100--Sobic010G273300 Sobic010G121100 Sobic010G121100 Sobic001G475100--Sobic010G121100 Sobic001G475100--Sobic007G188800 Sobic001G475100--Sobic008G111200 Sobic008G111200--Sobic007G163001 Sobic008G111200--Sobic003G207500 Sobic008G111200--Sobic001G475100 Sobic008G111200--Sobic004G324700 Sobic008G111200--Sobic002G031900 Sobic008G111200--Sobic005G145550 Sobic001G528500 Sobic001G528500 Sobic008G111200--Sobic001G528500 Sobic008G111200--Sobic005G188300 Sobic008G111200--Sobic010G135250 Sobic005G102900--Sobic003G207500 Sobic005G133600 Sobic005G133600 Sobic005G102900--Sobic005G133600 Sobic005G102900--Sobic007G188800 Sobic004G057500 Sobic004G057500 Sobic005G102900--Sobic004G057500 Sobic005G102900--Sobic007G185300 Sobic005G102900--Sobic001G475100 Sobic005G102900--Sobic010G121100 Sobic010G205600 Sobic010G205600 Sobic005G102900--Sobic010G205600 Sobic005G102900--Sobic010G273300 Sobic004G324700--Sobic005G145550 Sobic004G324700--Sobic007G163001 Sobic004G324700--Sobic005G189300 Sobic004G324700--Sobic002G031900 Sobic004G324700--Sobic010G214500 Sobic004G324700--Sobic008G111200 Sobic004G324700--Sobic004G111300 Sobic004G324700--Sobic003G207500 Sobic004G324700--Sobic003G179350
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.