Gene annotation
Transcriptome id Sobic.003G234000.1
Synonym Sb03g029160
Functional annotation DUF1645 domain containing protein, putative, expressed
UniProt C5XEK1
Pfam PF07816
Panther DB PTHR33095 PTHR33095:SF18
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G70420 : Protein of unknown function (DUF1645)
RAP-DB (Rice) LOC_Os01g45250.1 : DUF1645 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a038661 , Zm00025a028291
Brachypodium KQK08908
Barley HORVU5Hr1G023200.1 , HORVU3Hr1G057180.1
Wheat -
Populus -


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cDNA sequences
Sobic.003G234000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G280900 zinc finger, C3HC4 type domain containing protein, expressed -
2 Sobic.002G140300 plastocyanin-like domain containing protein, putative, expressed -
3 Sobic.001G341600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
4 Sobic.010G209100 WRKY28, expressed -
5 Sobic.001G538866 - -
6 Sobic.001G077400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K01723: hydroperoxide dehydratase
7 Sobic.009G217600 STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
8 Sobic.007G077200 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
9 Sobic.009G192600 Protein tyrosine/DOPA decarboxylase 1 (Os)(PubMedID : 27208977)@decarboxylase, putative, expressed K01592: tyrosine decarboxylase
10 Sobic.002G036100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed -
11 Sobic.001G259600 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
12 Sobic.008G042900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@harpin-induced protein 1 domain containing protein, expressed -
13 Sobic.009G200700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@VQ domain containing protein, putative, expressed -
14 Sobic.006G165100 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
15 Sobic.003G380900 Not investigated(PubMedID : 23766026)@"SERF1(Ortholog in rice:Schmidt et al., 2013)"(PubMedID : 31659872)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed -
16 Sobic.003G428700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.004G222500 gibberellin 2-beta-dioxygenase 7, putative, expressed K04125: gibberellin 2beta-dioxygenase
18 Sobic.001G441100 immediate-early fungal elicitor protein CMPG1, putative, expressed -
19 Sobic.006G179500 protein kinase APK1B, chloroplast precursor, putative, expressed -
20 Sobic.006G231100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -


Gene co-expression network
sample Sobic003G234000 Sobic003G234000 Sobic004G280900 Sobic004G280900 Sobic003G234000--Sobic004G280900 Sobic002G140300 Sobic002G140300 Sobic003G234000--Sobic002G140300 Sobic001G341600 Sobic001G341600 Sobic003G234000--Sobic001G341600 Sobic010G209100 Sobic010G209100 Sobic003G234000--Sobic010G209100 Sobic001G538866 Sobic001G538866 Sobic003G234000--Sobic001G538866 Sobic001G077400 Sobic001G077400 Sobic003G234000--Sobic001G077400 Sobic009G217600 Sobic009G217600 Sobic003G234000--Sobic009G217600 Sobic007G077200 Sobic007G077200 Sobic003G234000--Sobic007G077200 Sobic009G192600 Sobic009G192600 Sobic003G234000--Sobic009G192600 Sobic004G280900--Sobic001G077400 Sobic005G037000 Sobic005G037000 Sobic004G280900--Sobic005G037000 Sobic004G280900--Sobic009G217600 Sobic001G209800 Sobic001G209800 Sobic004G280900--Sobic001G209800 Sobic001G441100 Sobic001G441100 Sobic004G280900--Sobic001G441100 Sobic002G036100 Sobic002G036100 Sobic004G280900--Sobic002G036100 Sobic004G280900--Sobic002G140300 Sobic004G280900--Sobic001G538866 Sobic004G280900--Sobic001G341600 Sobic006G179500 Sobic006G179500 Sobic002G140300--Sobic006G179500 Sobic001G040200 Sobic001G040200 Sobic002G140300--Sobic001G040200 Sobic006G165100 Sobic006G165100 Sobic002G140300--Sobic006G165100 Sobic004G222500 Sobic004G222500 Sobic002G140300--Sobic004G222500 Sobic002G140300--Sobic001G538866 Sobic009G036100 Sobic009G036100 Sobic002G140300--Sobic009G036100 Sobic006G183400 Sobic006G183400 Sobic002G140300--Sobic006G183400 Sobic003G324400 Sobic003G324400 Sobic002G140300--Sobic003G324400 Sobic009G247900 Sobic009G247900 Sobic002G140300--Sobic009G247900 Sobic001G341600--Sobic009G217600 Sobic001G341600--Sobic001G441100 Sobic001G035000 Sobic001G035000 Sobic001G341600--Sobic001G035000 Sobic001G341600--Sobic001G077400 Sobic001G341600--Sobic004G280900 Sobic001G341600--Sobic002G140300 Sobic003G353800 Sobic003G353800 Sobic001G341600--Sobic003G353800 Sobic002G278500 Sobic002G278500 Sobic001G341600--Sobic002G278500 Sobic001G341600--Sobic001G538866 Sobic001G259600 Sobic001G259600 Sobic010G209100--Sobic001G259600 Sobic010G209100--Sobic001G341600 Sobic010G209100--Sobic001G077400 Sobic010G209100--Sobic007G077200 Sobic010G209100--Sobic002G036100 Sobic010G209100--Sobic004G280900 Sobic005G109000 Sobic005G109000 Sobic010G209100--Sobic005G109000 Sobic010G209100--Sobic002G140300 Sobic009G217500 Sobic009G217500 Sobic010G209100--Sobic009G217500 Sobic001G538866--Sobic002G140300 Sobic001G538866--Sobic001G040200 Sobic001G538866--Sobic004G280900 Sobic001G538866--Sobic002G036100 Sobic001G538866--Sobic003G324400 Sobic001G538866--Sobic006G165100 Sobic001G538866--Sobic001G077400 Sobic007G151100 Sobic007G151100 Sobic001G538866--Sobic007G151100 Sobic009G200700 Sobic009G200700 Sobic001G538866--Sobic009G200700 Sobic001G077400--Sobic004G280900 Sobic001G077400--Sobic005G037000 Sobic001G077400--Sobic001G209800 Sobic001G077400--Sobic001G441100 Sobic001G077400--Sobic009G217600 Sobic001G077400--Sobic001G035000 Sobic001G077400--Sobic002G036100 Sobic001G077400--Sobic006G165100 Sobic001G077400--Sobic001G341600 Sobic009G217600--Sobic001G441100 Sobic009G217600--Sobic001G341600 Sobic009G217600--Sobic001G077400 Sobic009G217600--Sobic001G035000 Sobic009G217600--Sobic004G280900 Sobic009G217600--Sobic001G209800 Sobic009G217600--Sobic005G037000 Sobic009G217600--Sobic003G353800 Sobic009G217600--Sobic002G278500 Sobic007G077200--Sobic001G259600 Sobic007G077100 Sobic007G077100 Sobic007G077200--Sobic007G077100 Sobic007G077200--Sobic010G209100 Sobic010G023200 Sobic010G023200 Sobic007G077200--Sobic010G023200 Sobic007G077200--Sobic009G217500 Sobic007G077200--Sobic003G324400 Sobic007G077200--Sobic001G035000 Sobic007G077200--Sobic001G040200 Sobic006G263600 Sobic006G263600 Sobic007G077200--Sobic006G263600 Sobic002G189100 Sobic002G189100 Sobic009G192600--Sobic002G189100 Sobic004G064500 Sobic004G064500 Sobic009G192600--Sobic004G064500 Sobic003G142300 Sobic003G142300 Sobic009G192600--Sobic003G142300 Sobic006G101100 Sobic006G101100 Sobic009G192600--Sobic006G101100 Sobic004G191400 Sobic004G191400 Sobic009G192600--Sobic004G191400 Sobic003G428700 Sobic003G428700 Sobic009G192600--Sobic003G428700 Sobic001G259900 Sobic001G259900 Sobic009G192600--Sobic001G259900 Sobic001G267600 Sobic001G267600 Sobic009G192600--Sobic001G267600 Sobic003G093000 Sobic003G093000 Sobic009G192600--Sobic003G093000
Octagon: transcription factors


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