Gene annotation
Transcriptome id Sobic.003G270500.1
Synonym FPS1, Sb03g032280
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
polyprenyl synthetase, putative, expressed
UniProt C5XHL1
Pfam PF00348
Panther DB PTHR11525 PTHR11525:SF5
NCBI CDD KOG0711; Polyprenyl synthetase
KEGG Orthology K00787; farnesyl diphosphate synthase
Gene Ontology GO:0008299; isoprenoid biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G47770 : farnesyl diphosphate synthase 1
RAP-DB (Rice) LOC_Os01g50760.1 : polyprenyl synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a038917 , Zm00025a036487 , Zm00025a027879
Brachypodium KQK05101 , KQK09374
Barley HORVU3Hr1G065960.7 , HORVU3Hr1G065960.5 , HORVU3Hr1G065960.4 , HORVU3Hr1G065960.3 , HORVU3Hr1G065960.2 , HORVU3Hr1G065960.1 , HORVU3Hr1G065960.8 , HORVU7Hr1G080750.1 , HORVU7Hr1G080750.2 , HORVU1Hr1G043190.1 , HORVU1Hr1G043190.2 , HORVU6Hr1G033960.1 , HORVU2Hr1G073510.1
Wheat TraesCS3D02G255200 , TraesCS3A02G254300 , TraesCS3B02G286300 , TraesCS3B02G286300
Populus PNT28985 , PNT28984 , PNT28986


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cDNA sequences
Sobic.003G270500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G410900 CRAL/TRIO domain containing protein, expressed -
2 Sobic.003G096500 protein kinase domain containing protein, expressed -
3 Sobic.006G060800 basic proline-rich protein, putative, expressed -
4 Sobic.008G060200 receptor-like protein kinase 5 precursor, putative, expressed -
5 Sobic.007G129201 - -
6 Sobic.008G060300 transcription factor(PubMedID : 30367619)@WRKY45, expressed -
7 Sobic.005G186500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSCP1 - Putative Serine Carboxypeptidase homologue, expressed K08249: hydroxymandelonitrile lyase
8 Sobic.007G025900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
9 Sobic.004G019100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@terpene synthase, putative, expressed K15086: (3S)-linalool synthase
10 Sobic.001G404500 gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed K08059: IFI30, interferon, gamma-inducible protein 30
11 Sobic.009G252100 expressed protein -
12 Sobic.006G123500 peptide methionine sulfoxide reductase, putative, expressed K07304: peptide-methionine (S)-S-oxide reductase
13 Sobic.009G023401 - -
14 Sobic.004G063200 B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed -
15 Sobic.005G193600 3 Ketoacyl CoA synthetase 2 KCS2 (fatty acid elongase) (At)(PubMedID : 27208977)@3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
16 Sobic.006G005400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@von Willebrand factor type A domain containing protein, putative, expressed -
17 Sobic.004G019400 Protein terpene synthase 14 (At)(PubMedID : 27208977)@"Protein terpene synthase 14, S-linalool synthase (Os)"(PubMedID : 27208977)@terpene synthase, putative, expressed -
18 Sobic.006G243200 L-asparaginase precursor protein, putative, expressed K13051: ASRGL1, L-asparaginase / beta-aspartyl-peptidase
19 Sobic.004G099700 receptor-like protein kinase 5 precursor, putative, expressed -
20 Sobic.006G007100 cysteine proteinase At4g11310 precursor, putative, expressed -


Gene co-expression network
sample Sobic003G270500 Sobic003G270500 Sobic003G410900 Sobic003G410900 Sobic003G270500--Sobic003G410900 Sobic003G096500 Sobic003G096500 Sobic003G270500--Sobic003G096500 Sobic006G060800 Sobic006G060800 Sobic003G270500--Sobic006G060800 Sobic008G060200 Sobic008G060200 Sobic003G270500--Sobic008G060200 Sobic007G129201 Sobic007G129201 Sobic003G270500--Sobic007G129201 Sobic008G060300 Sobic008G060300 Sobic003G270500--Sobic008G060300 Sobic005G186500 Sobic005G186500 Sobic003G270500--Sobic005G186500 Sobic007G025900 Sobic007G025900 Sobic003G270500--Sobic007G025900 Sobic004G019100 Sobic004G019100 Sobic003G270500--Sobic004G019100 Sobic001G404500 Sobic001G404500 Sobic003G410900--Sobic001G404500 Sobic003G410900--Sobic006G060800 Sobic004G063200 Sobic004G063200 Sobic003G410900--Sobic004G063200 Sobic003G410900--Sobic003G096500 Sobic001G351400 Sobic001G351400 Sobic003G410900--Sobic001G351400 Sobic004G099700 Sobic004G099700 Sobic003G410900--Sobic004G099700 Sobic006G123500 Sobic006G123500 Sobic003G410900--Sobic006G123500 Sobic009G189000 Sobic009G189000 Sobic003G410900--Sobic009G189000 Sobic006G164300 Sobic006G164300 Sobic003G410900--Sobic006G164300 Sobic003G096500--Sobic006G060800 Sobic001G201800 Sobic001G201800 Sobic003G096500--Sobic001G201800 Sobic004G019400 Sobic004G019400 Sobic003G096500--Sobic004G019400 Sobic004G078600 Sobic004G078600 Sobic003G096500--Sobic004G078600 Sobic009G252100 Sobic009G252100 Sobic003G096500--Sobic009G252100 Sobic003G096500--Sobic008G060300 Sobic003G096500--Sobic004G063200 Sobic005G193600 Sobic005G193600 Sobic003G096500--Sobic005G193600 Sobic003G096500--Sobic003G410900 Sobic006G060800--Sobic008G060300 Sobic006G060800--Sobic009G252100 Sobic002G041800 Sobic002G041800 Sobic006G060800--Sobic002G041800 Sobic006G060800--Sobic004G063200 Sobic006G060800--Sobic001G201800 Sobic006G060800--Sobic004G078600 Sobic007G089300 Sobic007G089300 Sobic006G060800--Sobic007G089300 Sobic001G145050 Sobic001G145050 Sobic006G060800--Sobic001G145050 Sobic002G366100 Sobic002G366100 Sobic006G060800--Sobic002G366100 Sobic008G060200--Sobic004G019400 Sobic007G037800 Sobic007G037800 Sobic008G060200--Sobic007G037800 Sobic009G202400 Sobic009G202400 Sobic008G060200--Sobic009G202400 Sobic008G060200--Sobic005G186500 Sobic008G060200--Sobic009G252100 Sobic010G045000 Sobic010G045000 Sobic008G060200--Sobic010G045000 Sobic005G065500 Sobic005G065500 Sobic008G060200--Sobic005G065500 Sobic002G195300 Sobic002G195300 Sobic008G060200--Sobic002G195300 Sobic008G060200--Sobic007G129201 Sobic007G129201--Sobic008G060300 Sobic007G129201--Sobic009G252100 Sobic007G129201--Sobic005G193600 Sobic003G098700 Sobic003G098700 Sobic007G129201--Sobic003G098700 Sobic005G193500 Sobic005G193500 Sobic007G129201--Sobic005G193500 Sobic007G129201--Sobic007G037800 Sobic007G129201--Sobic009G202400 Sobic007G129201--Sobic006G060800 Sobic007G129201--Sobic004G019100 Sobic008G060300--Sobic006G060800 Sobic008G060300--Sobic009G252100 Sobic008G060300--Sobic005G193600 Sobic008G060300--Sobic001G201800 Sobic002G202700 Sobic002G202700 Sobic008G060300--Sobic002G202700 Sobic008G060300--Sobic007G129201 Sobic008G060300--Sobic005G193500 Sobic004G195800 Sobic004G195800 Sobic008G060300--Sobic004G195800 Sobic003G366100 Sobic003G366100 Sobic008G060300--Sobic003G366100 Sobic006G005400 Sobic006G005400 Sobic005G186500--Sobic006G005400 Sobic006G007100 Sobic006G007100 Sobic005G186500--Sobic006G007100 Sobic006G007600 Sobic006G007600 Sobic005G186500--Sobic006G007600 Sobic010G171900 Sobic010G171900 Sobic005G186500--Sobic010G171900 Sobic006G027500 Sobic006G027500 Sobic005G186500--Sobic006G027500 Sobic005G186500--Sobic004G019100 Sobic004G018900 Sobic004G018900 Sobic005G186500--Sobic004G018900 Sobic005G219100 Sobic005G219100 Sobic005G186500--Sobic005G219100 Sobic005G186500--Sobic004G019400 Sobic007G025900--Sobic004G099700 Sobic002G201900 Sobic002G201900 Sobic007G025900--Sobic002G201900 Sobic006G065900 Sobic006G065900 Sobic007G025900--Sobic006G065900 Sobic010G273700 Sobic010G273700 Sobic007G025900--Sobic010G273700 Sobic005G119100 Sobic005G119100 Sobic007G025900--Sobic005G119100 Sobic007G025900--Sobic008G060300 Sobic005G045200 Sobic005G045200 Sobic007G025900--Sobic005G045200 Sobic007G025900--Sobic003G366100 Sobic007G025900--Sobic001G404500 Sobic004G019100--Sobic006G007100 Sobic004G019100--Sobic006G005400 Sobic001G291500 Sobic001G291500 Sobic004G019100--Sobic001G291500 Sobic004G019100--Sobic005G219100 Sobic004G019100--Sobic005G186500 Sobic004G019100--Sobic006G027500 Sobic004G019100--Sobic006G007600 Sobic005G219000 Sobic005G219000 Sobic004G019100--Sobic005G219000 Sobic003G388400 Sobic003G388400 Sobic004G019100--Sobic003G388400
Octagon: transcription factors


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