Gene annotation
Transcriptome id Sobic.003G312300.3,Sobic.003G312300.2
Synonym Sb03g036040, ATHMT-2, HMT2, HMT-2
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
Up-reguralion under drought (PubMedID : 24916767)
homocysteine S-methyltransferase protein, putative, expressed
UniProt A0A1W0VZS3 , A0A1W0VZU5
Pfam PF02574
Panther DB PTHR21091 PTHR21091:SF126
NCBI CDD KOG1579; Homocysteine S-methyltransferase
KEGG Orthology K00547; mmuM, homocysteine S-methyltransferase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G63250 : homocysteine methyltransferase 2
RAP-DB (Rice) LOC_Os12g41390.1 : homocysteine S-methyltransferase protein, putative, expressed
MaizeGDB (Corn) Zm00025a027355
Brachypodium -
Barley HORVU3Hr1G075690.4 , HORVU3Hr1G075690.5 , HORVU3Hr1G075690.6 , HORVU3Hr1G075690.1 , HORVU3Hr1G075690.2 , HORVU3Hr1G075690.3
Wheat TraesCS3B02G343000 , TraesCS3B02G343000 , TraesCS3A02G322600 , TraesCS3D02G308900 , TraesCS3D02G308900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G367650 -(PubMedID : 26976818) -
2 Sobic.001G518050 - -
3 Sobic.009G168800 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@phosphatidylethanolamine-binding protein, putative, expressed K06910: PEBP1, phosphatidylethanolamine-binding protein
4 Sobic.004G047900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed -
5 Sobic.006G104200 expressed protein -
6 Sobic.010G092500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@glutathione S-transferase GSTU6, putative, expressed K00799: GST, glutathione S-transferase
7 Sobic.006G050600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.001G237100 lectin-like receptor kinase, putative, expressed -
9 Sobic.003G435700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.001G354800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.001G307000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.010G267300 thaumatin, putative, expressed -
13 Sobic.004G268600 nodulin, putative, expressed -
14 Sobic.001G109000 Up-reguralion under drought(PubMedID : 24916767)@expressed protein -
15 Sobic.001G128000 expressed protein -
16 Sobic.006G035200 - -
17 Sobic.001G278650 - -
18 Sobic.008G081500 peptide transporter PTR3-A, putative, expressed -
19 Sobic.009G111800 OsFBO5 - F-box and other domain containing protein, expressed -
20 Sobic.007G013800 OsMADS26 - MADS-box family gene with MIKCc type-box, expressed -


Gene co-expression network
sample Sobic003G312300 Sobic003G312300 Sobic003G367650 Sobic003G367650 Sobic003G312300--Sobic003G367650 Sobic001G518050 Sobic001G518050 Sobic003G312300--Sobic001G518050 Sobic009G168800 Sobic009G168800 Sobic003G312300--Sobic009G168800 Sobic004G047900 Sobic004G047900 Sobic003G312300--Sobic004G047900 Sobic006G104200 Sobic006G104200 Sobic003G312300--Sobic006G104200 Sobic010G092500 Sobic010G092500 Sobic003G312300--Sobic010G092500 Sobic006G050600 Sobic006G050600 Sobic003G312300--Sobic006G050600 Sobic001G237100 Sobic001G237100 Sobic003G312300--Sobic001G237100 Sobic003G435700 Sobic003G435700 Sobic003G312300--Sobic003G435700 Sobic003G160300 Sobic003G160300 Sobic003G367650--Sobic003G160300 Sobic009G192200 Sobic009G192200 Sobic003G367650--Sobic009G192200 Sobic002G390200 Sobic002G390200 Sobic003G367650--Sobic002G390200 Sobic007G085900 Sobic007G085900 Sobic003G367650--Sobic007G085900 Sobic008G140050 Sobic008G140050 Sobic003G367650--Sobic008G140050 Sobic003G160433 Sobic003G160433 Sobic003G367650--Sobic003G160433 Sobic003G169000 Sobic003G169000 Sobic003G367650--Sobic003G169000 Sobic005G096450 Sobic005G096450 Sobic003G367650--Sobic005G096450 Sobic003G330350 Sobic003G330350 Sobic003G367650--Sobic003G330350 Sobic010G267300 Sobic010G267300 Sobic001G518050--Sobic010G267300 Sobic004G268600 Sobic004G268600 Sobic001G518050--Sobic004G268600 Sobic001G128000 Sobic001G128000 Sobic001G518050--Sobic001G128000 Sobic002G180732 Sobic002G180732 Sobic001G518050--Sobic002G180732 Sobic001G518050--Sobic003G160433 Sobic003G337200 Sobic003G337200 Sobic001G518050--Sobic003G337200 Sobic001G518050--Sobic002G390200 Sobic001G518050--Sobic003G160300 Sobic001G518050--Sobic007G085900 Sobic001G354800 Sobic001G354800 Sobic009G168800--Sobic001G354800 Sobic001G109000 Sobic001G109000 Sobic009G168800--Sobic001G109000 Sobic001G492000 Sobic001G492000 Sobic009G168800--Sobic001G492000 Sobic004G142500 Sobic004G142500 Sobic009G168800--Sobic004G142500 Sobic002G151200 Sobic002G151200 Sobic009G168800--Sobic002G151200 Sobic006G269501 Sobic006G269501 Sobic009G168800--Sobic006G269501 Sobic005G138500 Sobic005G138500 Sobic009G168800--Sobic005G138500 Sobic001G307000 Sobic001G307000 Sobic009G168800--Sobic001G307000 Sobic009G168800--Sobic004G047900 Sobic004G047900--Sobic001G307000 Sobic003G292400 Sobic003G292400 Sobic004G047900--Sobic003G292400 Sobic001G200700 Sobic001G200700 Sobic004G047900--Sobic001G200700 Sobic010G101300 Sobic010G101300 Sobic004G047900--Sobic010G101300 Sobic003G194400 Sobic003G194400 Sobic004G047900--Sobic003G194400 Sobic004G243300 Sobic004G243300 Sobic004G047900--Sobic004G243300 Sobic006G114700 Sobic006G114700 Sobic004G047900--Sobic006G114700 Sobic003G011400 Sobic003G011400 Sobic004G047900--Sobic003G011400 Sobic009G171400 Sobic009G171400 Sobic004G047900--Sobic009G171400 Sobic004G111400 Sobic004G111400 Sobic006G104200--Sobic004G111400 Sobic008G126800 Sobic008G126800 Sobic006G104200--Sobic008G126800 Sobic007G089400 Sobic007G089400 Sobic006G104200--Sobic007G089400 Sobic003G255800 Sobic003G255800 Sobic006G104200--Sobic003G255800 Sobic004G238400 Sobic004G238400 Sobic006G104200--Sobic004G238400 Sobic006G104200--Sobic003G312300 Sobic001G352666 Sobic001G352666 Sobic006G104200--Sobic001G352666 Sobic009G152800 Sobic009G152800 Sobic006G104200--Sobic009G152800 Sobic004G329600 Sobic004G329600 Sobic006G104200--Sobic004G329600 Sobic003G278200 Sobic003G278200 Sobic010G092500--Sobic003G278200 Sobic001G466450 Sobic001G466450 Sobic010G092500--Sobic001G466450 Sobic003G024600 Sobic003G024600 Sobic010G092500--Sobic003G024600 Sobic004G114600 Sobic004G114600 Sobic006G050600--Sobic004G114600 Sobic006G050600--Sobic005G138500 Sobic006G050600--Sobic009G171400 Sobic002G413200 Sobic002G413200 Sobic006G050600--Sobic002G413200 Sobic001G396900 Sobic001G396900 Sobic006G050600--Sobic001G396900 Sobic006G034300 Sobic006G034300 Sobic006G050600--Sobic006G034300 Sobic002G143300 Sobic002G143300 Sobic006G050600--Sobic002G143300 Sobic003G011000 Sobic003G011000 Sobic006G050600--Sobic003G011000 Sobic006G050600--Sobic006G269501 Sobic001G205950 Sobic001G205950 Sobic001G237100--Sobic001G205950 Sobic008G156800 Sobic008G156800 Sobic001G237100--Sobic008G156800 Sobic008G116800 Sobic008G116800 Sobic001G237100--Sobic008G116800 Sobic003G238750 Sobic003G238750 Sobic001G237100--Sobic003G238750 Sobic010G053700 Sobic010G053700 Sobic001G237100--Sobic010G053700 Sobic001G090600 Sobic001G090600 Sobic001G237100--Sobic001G090600 Sobic010G176000 Sobic010G176000 Sobic001G237100--Sobic010G176000 Sobic003G406850 Sobic003G406850 Sobic001G237100--Sobic003G406850 Sobic001G062066 Sobic001G062066 Sobic001G237100--Sobic001G062066 Sobic003G435700--Sobic001G518050 Sobic006G108500 Sobic006G108500 Sobic003G435700--Sobic006G108500 Sobic010G224100 Sobic010G224100 Sobic003G435700--Sobic010G224100 Sobic005G100500 Sobic005G100500 Sobic003G435700--Sobic005G100500 Sobic006G219950 Sobic006G219950 Sobic003G435700--Sobic006G219950 Sobic003G055400 Sobic003G055400 Sobic003G435700--Sobic003G055400 Sobic001G450900 Sobic001G450900 Sobic003G435700--Sobic001G450900 Sobic009G118500 Sobic009G118500 Sobic003G435700--Sobic009G118500 Sobic004G307200 Sobic004G307200 Sobic003G435700--Sobic004G307200
Octagon: transcription factors


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