Gene annotation
| Transcriptome id | Sobic.001G354800.1 |
|---|---|
| Synonym | Sb01g033920 |
| Functional annotation | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543) expressed protein |
| UniProt | C5WYK6 |
| Pfam | - |
| Panther DB | PTHR35463 PTHR35463:SF1 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | - |
|---|---|
| RAP-DB (Rice) | LOC_Os03g26490.1 : expressed protein |
| MaizeGDB (Corn) | Zm00025a002681 |
| Brachypodium | KQK21483 |
| Barley | HORVU1Hr1G009140.1 |
| Wheat | TraesCS1A02G047400 , TraesCS1D02G048500 , TraesCS1D02G049400 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G109000 | Up-reguralion under drought(PubMedID : 24916767)@expressed protein | - |
| 2 | Sobic.001G492000 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@embryonic protein DC-8, putative, expressed | - |
| 3 | Sobic.009G168800 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@phosphatidylethanolamine-binding protein, putative, expressed | K06910: PEBP1, phosphatidylethanolamine-binding protein |
| 4 | Sobic.004G142500 | Up-reguralion under drought(PubMedID : 24916767)@late embryogenesis abundant protein D-34, putative, expressed | - |
| 5 | Sobic.002G151200 | seed maturation protein LEA 4, putative, expressed | - |
| 6 | Sobic.006G269501 | - | - |
| 7 | Sobic.001G307000 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 8 | Sobic.005G138500 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 9 | Sobic.009G215700 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@late embryogenesis abundant protein, group 3, putative, expressed | - |
| 10 | Sobic.004G047900 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed | - |
| 11 | Sobic.010G146500 | RGH1A, putative, expressed | - |
| 12 | Sobic.006G104000 | ethylene-insensitive 3, putative, expressed | K14514: ethylene-insensitive protein 3 |
| 13 | Sobic.004G243300 | expressed protein | - |
| 14 | Sobic.003G011000 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@AAA-type ATPase family protein, putative, expressed | - |
| 15 | Sobic.001G200700 | expressed protein | - |
| 16 | Sobic.002G383500 | expressed protein | - |
| 17 | Sobic.010G101300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@dehydrogenase E1 component domain containing protein, expressed | K00161: PDHA, pyruvate dehydrogenase E1 component alpha subunit |
| 18 | Sobic.003G292400 | NADP-dependent malic enzyme(PubMedID : 26186930)@NADP-malic enzyme(PubMedID : 26904072)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@C4 carbon fixation(PubMedID : 28620409)@NADP-dependent malic enzyme, putative, expressed | K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) |
| 19 | Sobic.003G194400 | HSF-type DNA-binding domain containing protein, expressed | K09419: heat shock transcription factor, other eukaryote |
| 20 | Sobic.006G034300 | Transketolase(PubMedID : 26186930)@"Transketolase, putative (Os)"(PubMedID : 27208977)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@transketolase, chloroplast precursor, putative, expressed | K00615: E2.2.1.1, tktA, transketolase |
Gene co-expression network
Octagon: transcription factors
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