Gene annotation
Transcriptome id Sobic.003G328000.2,Sobic.003G328000.1
Synonym Sb03g037400
Functional annotation 50S ribosomal protein, putative, expressed
UniProt A0A1B6Q6N3
Pfam PF00468
Panther DB PTHR14503 PTHR14503:SF3
NCBI CDD -
KEGG Orthology K02914; RP-L34, MRPL34, large subunit ribosomal protein L34
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G29070 : Ribosomal protein L34
RAP-DB (Rice) LOC_Os01g59060.1 : 50S ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a027170
Brachypodium KQK08379 , KQK10210
Barley HORVU3Hr1G078780.1 , HORVU3Hr1G078780.3 , HORVU3Hr1G078780.2
Wheat TraesCS3B02G362100
Populus -


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cDNA sequences
Sobic.003G328000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G219500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
2 Sobic.003G246400 ribosomal protein L7/L12 C-terminal domain containing protein, expressed K02935: RP-L7, MRPL12, large subunit ribosomal protein L7/L12
3 Sobic.004G317900 expressed protein -
4 Sobic.003G328200 thylakoid lumenal 20 kDa protein, putative, expressed -
5 Sobic.002G414400 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
6 Sobic.001G040000 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
7 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
8 Sobic.010G233800 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
9 Sobic.004G116100 50S ribosomal protein L21, chloroplast precursor, putative, expressed K02888: RP-L21, MRPL21, large subunit ribosomal protein L21
10 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
11 Sobic.003G256200 ribosomal protein rpS20, putative, expressed K02968: RP-S20, small subunit ribosomal protein S20
12 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
13 Sobic.004G298100 50S ribosomal protein L19, chloroplast precursor, putative, expressed K02884: RP-L19, MRPL19, large subunit ribosomal protein L19
14 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
15 Sobic.003G300500 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
16 Sobic.007G185100 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
17 Sobic.004G234200 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
18 Sobic.004G193400 photosystem II 5 kDa protein, chloroplast precursor, putative, expressed -
19 Sobic.001G411300 ribosomal protein L10, putative, expressed K02864: RP-L10, MRPL10, large subunit ribosomal protein L10
20 Sobic.009G212000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1


Gene co-expression network
sample Sobic003G328000 Sobic003G328000 Sobic010G219500 Sobic010G219500 Sobic003G328000--Sobic010G219500 Sobic003G246400 Sobic003G246400 Sobic003G328000--Sobic003G246400 Sobic004G317900 Sobic004G317900 Sobic003G328000--Sobic004G317900 Sobic003G328200 Sobic003G328200 Sobic003G328000--Sobic003G328200 Sobic002G414400 Sobic002G414400 Sobic003G328000--Sobic002G414400 Sobic001G040000 Sobic001G040000 Sobic003G328000--Sobic001G040000 Sobic001G453300 Sobic001G453300 Sobic003G328000--Sobic001G453300 Sobic010G233800 Sobic010G233800 Sobic003G328000--Sobic010G233800 Sobic004G116100 Sobic004G116100 Sobic003G328000--Sobic004G116100 Sobic003G295800 Sobic003G295800 Sobic010G219500--Sobic003G295800 Sobic002G306201 Sobic002G306201 Sobic010G219500--Sobic002G306201 Sobic009G098100 Sobic009G098100 Sobic010G219500--Sobic009G098100 Sobic004G253800 Sobic004G253800 Sobic010G219500--Sobic004G253800 Sobic007G171800 Sobic007G171800 Sobic010G219500--Sobic007G171800 Sobic009G001500 Sobic009G001500 Sobic010G219500--Sobic009G001500 Sobic004G191200 Sobic004G191200 Sobic010G219500--Sobic004G191200 Sobic008G030000 Sobic008G030000 Sobic010G219500--Sobic008G030000 Sobic007G034500 Sobic007G034500 Sobic010G219500--Sobic007G034500 Sobic003G246400--Sobic004G317900 Sobic001G411300 Sobic001G411300 Sobic003G246400--Sobic001G411300 Sobic003G256200 Sobic003G256200 Sobic003G246400--Sobic003G256200 Sobic003G246400--Sobic001G453300 Sobic003G246400--Sobic003G328200 Sobic004G298100 Sobic004G298100 Sobic003G246400--Sobic004G298100 Sobic001G191000 Sobic001G191000 Sobic003G246400--Sobic001G191000 Sobic003G246400--Sobic010G233800 Sobic003G393800 Sobic003G393800 Sobic003G246400--Sobic003G393800 Sobic004G317900--Sobic003G246400 Sobic007G185100 Sobic007G185100 Sobic004G317900--Sobic007G185100 Sobic004G317900--Sobic003G295800 Sobic004G317900--Sobic010G233800 Sobic001G027600 Sobic001G027600 Sobic004G317900--Sobic001G027600 Sobic004G317900--Sobic001G453300 Sobic004G317900--Sobic003G328200 Sobic001G017000 Sobic001G017000 Sobic004G317900--Sobic001G017000 Sobic004G054500 Sobic004G054500 Sobic004G317900--Sobic004G054500 Sobic001G527100 Sobic001G527100 Sobic003G328200--Sobic001G527100 Sobic003G328200--Sobic001G040000 Sobic003G328200--Sobic004G317900 Sobic003G328200--Sobic003G246400 Sobic001G240000 Sobic001G240000 Sobic003G328200--Sobic001G240000 Sobic003G328200--Sobic003G295800 Sobic003G328200--Sobic004G116100 Sobic004G311100 Sobic004G311100 Sobic003G328200--Sobic004G311100 Sobic003G386300 Sobic003G386300 Sobic003G328200--Sobic003G386300 Sobic002G338000 Sobic002G338000 Sobic002G414400--Sobic002G338000 Sobic010G000500 Sobic010G000500 Sobic002G414400--Sobic010G000500 Sobic001G206200 Sobic001G206200 Sobic002G414400--Sobic001G206200 Sobic004G193400 Sobic004G193400 Sobic002G414400--Sobic004G193400 Sobic002G030200 Sobic002G030200 Sobic002G414400--Sobic002G030200 Sobic004G234200 Sobic004G234200 Sobic002G414400--Sobic004G234200 Sobic003G055300 Sobic003G055300 Sobic002G414400--Sobic003G055300 Sobic002G297300 Sobic002G297300 Sobic002G414400--Sobic002G297300 Sobic002G288300 Sobic002G288300 Sobic002G414400--Sobic002G288300 Sobic004G335800 Sobic004G335800 Sobic001G040000--Sobic004G335800 Sobic001G391400 Sobic001G391400 Sobic001G040000--Sobic001G391400 Sobic001G040000--Sobic001G240000 Sobic001G040000--Sobic001G527100 Sobic001G040000--Sobic003G295800 Sobic002G251400 Sobic002G251400 Sobic001G040000--Sobic002G251400 Sobic001G040000--Sobic004G116100 Sobic001G122400 Sobic001G122400 Sobic001G040000--Sobic001G122400 Sobic001G040000--Sobic003G386300 Sobic001G453300--Sobic001G027600 Sobic001G427000 Sobic001G427000 Sobic001G453300--Sobic001G427000 Sobic001G383900 Sobic001G383900 Sobic001G453300--Sobic001G383900 Sobic001G453300--Sobic003G256200 Sobic001G076500 Sobic001G076500 Sobic001G453300--Sobic001G076500 Sobic001G453300--Sobic010G233800 Sobic001G453300--Sobic003G246400 Sobic003G132600 Sobic003G132600 Sobic001G453300--Sobic003G132600 Sobic001G453300--Sobic001G391400 Sobic010G233800--Sobic001G076500 Sobic010G233800--Sobic001G453300 Sobic010G233800--Sobic004G317900 Sobic010G233800--Sobic001G427000 Sobic010G233800--Sobic003G393800 Sobic010G233800--Sobic003G246400 Sobic010G233800--Sobic001G027600 Sobic010G233800--Sobic007G185100 Sobic010G233800--Sobic004G116100 Sobic004G116100--Sobic004G335800 Sobic004G116100--Sobic001G040000 Sobic004G116100--Sobic001G391400 Sobic004G116100--Sobic001G453300 Sobic004G116100--Sobic001G527100 Sobic004G116100--Sobic004G298100 Sobic004G116100--Sobic003G328200 Sobic004G116100--Sobic003G386300 Sobic004G116100--Sobic004G311100
Octagon: transcription factors


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