Gene annotation
Transcriptome id Sobic.003G367000.1
Synonym Sb03g040850, PUB22
Functional annotation U-box domain-containing protein, putative, expressed
UniProt C5XQM1
Pfam PF04564
Panther DB PTHR22849 PTHR22849:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT2G35930 : plant U-box 23
RAP-DB (Rice) LOC_Os01g64570.1 : U-box domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a026725
Brachypodium PNT73246 , PNT73245
Barley HORVU3Hr1G083500.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G188000 NADPH-dependent FMN reductase domain containing protein, expressed K03809: NAD(P)H dehydrogenase (quinone)
2 Sobic.002G418400 ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed -
3 Sobic.001G304100 LTPL144 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
4 Sobic.004G055700 -(PubMedID : 26976818)@glycine cleavage system H protein, putative, expressed K02437: gcvH, glycine cleavage system H protein
5 Sobic.006G083500 SLL1 protein, putative, expressed -
6 Sobic.009G125850 - -
7 Sobic.001G395800 SMP-30/Gluconolaconase/LRE domain protein, putative, expressed -
8 Sobic.003G311800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@xylosyltransferase, putative, expressed -
9 Sobic.001G508466 - -
10 Sobic.004G310200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@receptor-like protein kinase like protein, putative, expressed -
11 Sobic.002G213600 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR38 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
12 Sobic.001G047800 cytochrome b-c1 complex subunit 7, putative, expressed K00417: QCR7, ubiquinol-cytochrome c reductase subunit 7
13 Sobic.009G032700 peroxidase precursor, putative, expressed K00430: peroxidase
14 Sobic.001G304201 - -
15 Sobic.002G250000 Protein dihydroflavonol-4-reductase DFR (Os)(PubMedID : 27208977)@dehydrogenase, putative, expressed -
16 Sobic.001G049900 UDP-rhamnose rhamnosyltransferase, putative, expressed -
17 Sobic.004G042000 apoptosis-inducing factor 2, putative, expressed -
18 Sobic.001G302600 LTPL147 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
19 Sobic.002G327201 - -
20 Sobic.008G158732 - -


Gene co-expression network
sample Sobic003G367000 Sobic003G367000 Sobic009G188000 Sobic009G188000 Sobic003G367000--Sobic009G188000 Sobic002G418400 Sobic002G418400 Sobic003G367000--Sobic002G418400 Sobic001G304100 Sobic001G304100 Sobic003G367000--Sobic001G304100 Sobic004G055700 Sobic004G055700 Sobic003G367000--Sobic004G055700 Sobic006G083500 Sobic006G083500 Sobic003G367000--Sobic006G083500 Sobic009G125850 Sobic009G125850 Sobic003G367000--Sobic009G125850 Sobic001G395800 Sobic001G395800 Sobic003G367000--Sobic001G395800 Sobic003G311800 Sobic003G311800 Sobic003G367000--Sobic003G311800 Sobic001G508466 Sobic001G508466 Sobic003G367000--Sobic001G508466 Sobic001G313600 Sobic001G313600 Sobic009G188000--Sobic001G313600 Sobic009G188000--Sobic001G304100 Sobic005G107900 Sobic005G107900 Sobic009G188000--Sobic005G107900 Sobic001G502400 Sobic001G502400 Sobic009G188000--Sobic001G502400 Sobic001G238400 Sobic001G238400 Sobic009G188000--Sobic001G238400 Sobic006G235100 Sobic006G235100 Sobic009G188000--Sobic006G235100 Sobic003G084400 Sobic003G084400 Sobic009G188000--Sobic003G084400 Sobic008G009400 Sobic008G009400 Sobic009G188000--Sobic008G009400 Sobic001G295200 Sobic001G295200 Sobic009G188000--Sobic001G295200 Sobic002G418400--Sobic006G083500 Sobic003G215700 Sobic003G215700 Sobic002G418400--Sobic003G215700 Sobic003G209000 Sobic003G209000 Sobic002G418400--Sobic003G209000 Sobic002G398901 Sobic002G398901 Sobic002G418400--Sobic002G398901 Sobic004G211833 Sobic004G211833 Sobic002G418400--Sobic004G211833 Sobic010G012500 Sobic010G012500 Sobic002G418400--Sobic010G012500 Sobic001G047800 Sobic001G047800 Sobic002G418400--Sobic001G047800 Sobic004G259200 Sobic004G259200 Sobic002G418400--Sobic004G259200 Sobic001G404800 Sobic001G404800 Sobic002G418400--Sobic001G404800 Sobic001G304100--Sobic009G188000 Sobic001G304100--Sobic001G238400 Sobic001G302600 Sobic001G302600 Sobic001G304100--Sobic001G302600 Sobic002G213600 Sobic002G213600 Sobic001G304100--Sobic002G213600 Sobic001G304100--Sobic003G084400 Sobic001G304100--Sobic001G313600 Sobic001G304100--Sobic005G107900 Sobic003G417200 Sobic003G417200 Sobic001G304100--Sobic003G417200 Sobic006G234800 Sobic006G234800 Sobic001G304100--Sobic006G234800 Sobic005G113300 Sobic005G113300 Sobic004G055700--Sobic005G113300 Sobic003G160700 Sobic003G160700 Sobic004G055700--Sobic003G160700 Sobic001G361600 Sobic001G361600 Sobic004G055700--Sobic001G361600 Sobic004G055700--Sobic009G188000 Sobic002G090300 Sobic002G090300 Sobic004G055700--Sobic002G090300 Sobic004G055700--Sobic002G418400 Sobic010G028200 Sobic010G028200 Sobic004G055700--Sobic010G028200 Sobic004G042000 Sobic004G042000 Sobic004G055700--Sobic004G042000 Sobic004G220000 Sobic004G220000 Sobic004G055700--Sobic004G220000 Sobic006G083500--Sobic004G211833 Sobic006G083500--Sobic010G012500 Sobic006G083500--Sobic003G215700 Sobic006G083500--Sobic002G418400 Sobic009G176000 Sobic009G176000 Sobic006G083500--Sobic009G176000 Sobic006G083500--Sobic002G398901 Sobic006G083500--Sobic003G209000 Sobic007G051000 Sobic007G051000 Sobic006G083500--Sobic007G051000 Sobic001G134400 Sobic001G134400 Sobic006G083500--Sobic001G134400 Sobic007G016100 Sobic007G016100 Sobic009G125850--Sobic007G016100 Sobic005G016700 Sobic005G016700 Sobic009G125850--Sobic005G016700 Sobic009G125850--Sobic003G367000 Sobic010G031000 Sobic010G031000 Sobic009G125850--Sobic010G031000 Sobic001G513300 Sobic001G513300 Sobic009G125850--Sobic001G513300 Sobic009G069600 Sobic009G069600 Sobic009G125850--Sobic009G069600 Sobic009G125850--Sobic001G404800 Sobic009G125850--Sobic001G508466 Sobic010G084600 Sobic010G084600 Sobic009G125850--Sobic010G084600 Sobic001G395800--Sobic003G311800 Sobic010G212500 Sobic010G212500 Sobic001G395800--Sobic010G212500 Sobic001G395800--Sobic004G042000 Sobic003G399600 Sobic003G399600 Sobic001G395800--Sobic003G399600 Sobic004G297900 Sobic004G297900 Sobic001G395800--Sobic004G297900 Sobic002G003800 Sobic002G003800 Sobic001G395800--Sobic002G003800 Sobic001G264000 Sobic001G264000 Sobic001G395800--Sobic001G264000 Sobic003G269600 Sobic003G269600 Sobic001G395800--Sobic003G269600 Sobic006G197100 Sobic006G197100 Sobic001G395800--Sobic006G197100 Sobic003G311800--Sobic004G297900 Sobic003G311800--Sobic002G003800 Sobic001G049900 Sobic001G049900 Sobic003G311800--Sobic001G049900 Sobic009G109000 Sobic009G109000 Sobic003G311800--Sobic009G109000 Sobic003G311800--Sobic006G197100 Sobic006G274933 Sobic006G274933 Sobic003G311800--Sobic006G274933 Sobic002G183700 Sobic002G183700 Sobic003G311800--Sobic002G183700 Sobic007G090469 Sobic007G090469 Sobic003G311800--Sobic007G090469 Sobic003G311800--Sobic004G042000 Sobic004G146000 Sobic004G146000 Sobic001G508466--Sobic004G146000 Sobic004G159400 Sobic004G159400 Sobic001G508466--Sobic004G159400 Sobic004G205100 Sobic004G205100 Sobic001G508466--Sobic004G205100 Sobic001G508466--Sobic002G418400 Sobic005G099000 Sobic005G099000 Sobic001G508466--Sobic005G099000 Sobic001G108200 Sobic001G108200 Sobic001G508466--Sobic001G108200 Sobic002G355100 Sobic002G355100 Sobic001G508466--Sobic002G355100 Sobic009G234100 Sobic009G234100 Sobic001G508466--Sobic009G234100 Sobic004G208700 Sobic004G208700 Sobic001G508466--Sobic004G208700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.