Gene annotation
Transcriptome id Sobic.003G370400.1
Synonym 1, AMT2, Sb03g041140, ATAMT2
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
ammonium transporter protein, putative, expressed
UniProt C5WTW4 , C5XR90
Pfam PF00909
Panther DB PTHR11730 PTHR11730:SF38
NCBI CDD KOG0682; Ammonia permease
KEGG Orthology K03320; amt, AMT, ammonium transporter, Amt family
Gene Ontology GO:0016020; membrane GO:0015696ammonium transport GO:0008519ammonium transmembrane transporter activity


Orthologs (automatic annotation)
TAIR AT2G38290 : ammonium transporter 2
RAP-DB (Rice) LOC_Os01g65000.1 : ammonium transporter protein, putative, expressed
MaizeGDB (Corn) Zm00025a020615 , Zm00025a016807 , Zm00025a043934 , Zm00025a039553
Brachypodium KQK05814 , KQK13209 , KQK10804 , KQK10805 , KQK12242
Barley HORVU3Hr1G082540.2 , HORVU3Hr1G082540.1 , HORVU5Hr1G095030.1 , HORVU5Hr1G095030.2 , HORVU3Hr1G087690.1 , HORVU3Hr1G087690.2 , HORVU3Hr1G082610.2 , HORVU3Hr1G082610.1 , HORVU1Hr1G070730.8 , HORVU1Hr1G070730.6 , HORVU1Hr1G070730.7 , HORVU1Hr1G070730.4 , HORVU1Hr1G070730.5 , HORVU1Hr1G070730.2 , HORVU1Hr1G070730.3 , HORVU1Hr1G070730.1
Wheat TraesCS3A02G350800 , TraesCS3D02G344800 , TraesCS5D02G519400 , TraesCS5D02G519400 , TraesCS1D02G296600 , TraesCS3B02G383400 , TraesCS4A02G352900 , TraesCS1A02G295300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G109832 - -
2 Sobic.010G260300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.003G225900 expressed protein -
4 Sobic.008G049250 - -
5 Sobic.006G114200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@heavy metal associated domain containing protein, expressed -
6 Sobic.003G229000 cytochrome P450 72A1, putative, expressed -
7 Sobic.002G089700 cytochrome P450, putative, expressed -
8 Sobic.003G078501 - -
9 Sobic.009G020950 - -
10 Sobic.002G189000 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
11 Sobic.004G155150 - -
12 Sobic.001G095750 - -
13 Sobic.004G006500 expressed protein -
14 Sobic.002G271100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
15 Sobic.001G314300 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
16 Sobic.001G125100 pre-mRNA-splicing factor, putative, expressed K12817: PRPF18, pre-mRNA-splicing factor 18
17 Sobic.007G025800 amino acid transporter, putative, expressed -
18 Sobic.001G159850 - -
19 Sobic.001G159850 - -
20 Sobic.001G159850 - -


Gene co-expression network
sample Sobic003G370400 Sobic003G370400 Sobic003G109832 Sobic003G109832 Sobic003G370400--Sobic003G109832 Sobic010G260300 Sobic010G260300 Sobic003G370400--Sobic010G260300 Sobic003G225900 Sobic003G225900 Sobic003G370400--Sobic003G225900 Sobic008G049250 Sobic008G049250 Sobic003G370400--Sobic008G049250 Sobic006G114200 Sobic006G114200 Sobic003G370400--Sobic006G114200 Sobic003G229000 Sobic003G229000 Sobic003G370400--Sobic003G229000 Sobic002G089700 Sobic002G089700 Sobic003G370400--Sobic002G089700 Sobic003G078501 Sobic003G078501 Sobic003G370400--Sobic003G078501 Sobic009G020950 Sobic009G020950 Sobic003G370400--Sobic009G020950 Sobic010G273700 Sobic010G273700 Sobic003G109832--Sobic010G273700 Sobic001G314300 Sobic001G314300 Sobic003G109832--Sobic001G314300 Sobic009G227800 Sobic009G227800 Sobic003G109832--Sobic009G227800 Sobic001G095750 Sobic001G095750 Sobic003G109832--Sobic001G095750 Sobic004G006500 Sobic004G006500 Sobic003G109832--Sobic004G006500 Sobic003G109832--Sobic003G370400 Sobic003G423200 Sobic003G423200 Sobic003G109832--Sobic003G423200 Sobic002G137800 Sobic002G137800 Sobic003G109832--Sobic002G137800 Sobic002G185200 Sobic002G185200 Sobic003G109832--Sobic002G185200 Sobic002G189000 Sobic002G189000 Sobic010G260300--Sobic002G189000 Sobic010G260300--Sobic003G229000 Sobic009G183000 Sobic009G183000 Sobic010G260300--Sobic009G183000 Sobic007G025800 Sobic007G025800 Sobic010G260300--Sobic007G025800 Sobic002G271100 Sobic002G271100 Sobic010G260300--Sobic002G271100 Sobic010G260300--Sobic003G225900 Sobic004G155150 Sobic004G155150 Sobic010G260300--Sobic004G155150 Sobic003G233900 Sobic003G233900 Sobic010G260300--Sobic003G233900 Sobic003G198150 Sobic003G198150 Sobic010G260300--Sobic003G198150 Sobic006G267900 Sobic006G267900 Sobic003G225900--Sobic006G267900 Sobic003G225900--Sobic002G189000 Sobic003G225900--Sobic002G271100 Sobic002G427400 Sobic002G427400 Sobic003G225900--Sobic002G427400 Sobic003G373150 Sobic003G373150 Sobic003G225900--Sobic003G373150 Sobic001G081600 Sobic001G081600 Sobic003G225900--Sobic001G081600 Sobic003G225900--Sobic010G260300 Sobic005G087800 Sobic005G087800 Sobic003G225900--Sobic005G087800 Sobic004G283201 Sobic004G283201 Sobic003G225900--Sobic004G283201 Sobic008G049250--Sobic003G370400 Sobic003G363100 Sobic003G363100 Sobic008G049250--Sobic003G363100 Sobic010G097900 Sobic010G097900 Sobic008G049250--Sobic010G097900 Sobic003G294350 Sobic003G294350 Sobic008G049250--Sobic003G294350 Sobic008G049250--Sobic007G025800 Sobic001G030600 Sobic001G030600 Sobic008G049250--Sobic001G030600 Sobic008G049250--Sobic004G006500 Sobic008G162201 Sobic008G162201 Sobic008G049250--Sobic008G162201 Sobic008G049250--Sobic010G260300 Sobic006G114200--Sobic001G314300 Sobic006G114200--Sobic001G095750 Sobic006G114200--Sobic004G006500 Sobic006G114200--Sobic002G185200 Sobic001G314700 Sobic001G314700 Sobic006G114200--Sobic001G314700 Sobic001G118900 Sobic001G118900 Sobic006G114200--Sobic001G118900 Sobic002G195800 Sobic002G195800 Sobic006G114200--Sobic002G195800 Sobic006G114200--Sobic001G030600 Sobic006G113800 Sobic006G113800 Sobic006G114200--Sobic006G113800 Sobic003G229000--Sobic010G260300 Sobic003G229000--Sobic002G189000 Sobic003G252400 Sobic003G252400 Sobic003G229000--Sobic003G252400 Sobic002G110200 Sobic002G110200 Sobic003G229000--Sobic002G110200 Sobic007G131700 Sobic007G131700 Sobic003G229000--Sobic007G131700 Sobic002G013900 Sobic002G013900 Sobic003G229000--Sobic002G013900 Sobic003G291600 Sobic003G291600 Sobic003G229000--Sobic003G291600 Sobic005G209500 Sobic005G209500 Sobic003G229000--Sobic005G209500 Sobic009G128300 Sobic009G128300 Sobic003G229000--Sobic009G128300 Sobic002G089700--Sobic003G225900 Sobic010G006700 Sobic010G006700 Sobic002G089700--Sobic010G006700 Sobic002G089700--Sobic003G373150 Sobic002G089700--Sobic003G078501 Sobic002G089700--Sobic006G267900 Sobic003G141800 Sobic003G141800 Sobic002G089700--Sobic003G141800 Sobic002G089700--Sobic005G087800 Sobic001G125100 Sobic001G125100 Sobic002G089700--Sobic001G125100 Sobic007G217300 Sobic007G217300 Sobic002G089700--Sobic007G217300 Sobic004G310600 Sobic004G310600 Sobic003G078501--Sobic004G310600 Sobic009G000700 Sobic009G000700 Sobic003G078501--Sobic009G000700 Sobic003G078501--Sobic010G006700 Sobic003G078501--Sobic001G125100 Sobic001G159850 Sobic001G159850 Sobic003G078501--Sobic001G159850 Sobic009G020950--Sobic003G370400 Sobic004G337500 Sobic004G337500 Sobic009G020950--Sobic004G337500 Sobic003G031800 Sobic003G031800 Sobic009G020950--Sobic003G031800 Sobic009G020950--Sobic002G137800 Sobic009G020950--Sobic010G260300 Sobic009G020950--Sobic003G229000 Sobic001G045600 Sobic001G045600 Sobic009G020950--Sobic001G045600 Sobic002G009900 Sobic002G009900 Sobic009G020950--Sobic002G009900 Sobic009G020950--Sobic001G095750
Octagon: transcription factors


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