Gene annotation
Transcriptome id Sobic.003G376100.1
Synonym Sb03g041600
Functional annotation 4,5-DOPA dioxygenase extradiol, putative, expressed
UniProt C5XRD8
Pfam PF02900
Panther DB PTHR30096 PTHR30096:SF0
NCBI CDD -
KEGG Orthology K15777; 4,5-DOPA dioxygenase extradiol
Gene Ontology GO:0016491; oxidoreductase activity GO:0008198ferrous iron binding GO:0006725cellular aromatic compound metabolic process


Orthologs (automatic annotation)
TAIR AT4G15093 : catalytic LigB subunit of aromatic ring-opening dioxygenase family
RAP-DB (Rice) LOC_Os01g65680.1 : 4,5-DOPA dioxygenase extradiol, putative, expressed
MaizeGDB (Corn) Zm00025a039509 , Zm00025a026582
Brachypodium KQK10877 , KQK10876
Barley HORVU3Hr1G081590.4 , HORVU3Hr1G081590.5 , HORVU3Hr1G081590.6 , HORVU3Hr1G081590.7 , HORVU3Hr1G081590.1 , HORVU3Hr1G081590.2 , HORVU3Hr1G081590.3 , HORVU3Hr1G081590.8 , HORVU3Hr1G081590.9 , HORVU3Hr1G081580.2 , HORVU3Hr1G081580.1 , HORVU6Hr1G002390.8 , HORVU6Hr1G002390.9 , HORVU6Hr1G002390.6 , HORVU6Hr1G002390.7 , HORVU6Hr1G002390.4 , HORVU6Hr1G002390.5 , HORVU6Hr1G002390.2 , HORVU6Hr1G002390.3 , HORVU6Hr1G002390.1 , HORVU6Hr1G002390.10 , HORVU6Hr1G002390.11 , HORVU6Hr1G002390.12 , HORVU3Hr1G081590.10 , HORVU3Hr1G081590.11
Wheat TraesCS3D02G404600 , TraesCS6B02G018700 , TraesCS3D02G381700 , TraesCS3D02G381600 , TraesCS3B02G421200 , TraesCS6A02G012500 , TraesCS3D02G381800 , TraesCS3B02G421000 , TraesCS6D02G015100 , TraesCS3A02G387700 , TraesCS3A02G387600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G141100 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
2 Sobic.009G145600 peroxidase precursor, putative, expressed K00430: peroxidase
3 Sobic.008G066401 - -
4 Sobic.009G145700 peroxidase precursor, putative, expressed K00430: peroxidase
5 Sobic.009G200566 - -
6 Sobic.003G426600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
7 Sobic.006G008000 O-methyltransferase, putative, expressed -
8 Sobic.006G054800 "glycerophosphodiester phosphodiesterase, up-regulated under drought stress, involved in the final step of the choline biosynthesis pathway, mapped into a QTL involved in stay green (QSTG1_6) "(PubMedID : 24655390)@Glycerophosphodiester phosphodiesterase ( At)(PubMedID : 27208977)@glycerophosphoryl diester phosphodiesterase family protein, putative, expressed -
9 Sobic.003G043500 - -
10 Sobic.002G012500 DUF538 domain containing protein, putative, expressed -
11 Sobic.010G082600 EF hand family protein, putative, expressed -
12 Sobic.004G245700 expressed protein -
13 Sobic.009G184000 ICE-like protease p20 domain containing protein, putative, expressed -
14 Sobic.003G362700 cytochrome P450, putative, expressed -
15 Sobic.008G066200 expressed protein -
16 Sobic.010G062300 plant protein of unknown function domain containing protein, expressed -
17 Sobic.002G176100 membrane protein, putative, expressed -
18 Sobic.006G235100 expressed protein -
19 Sobic.006G141700 OsGrx_C2.2 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
20 Sobic.001G112200 LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -


Gene co-expression network
sample Sobic003G376100 Sobic003G376100 Sobic004G141100 Sobic004G141100 Sobic003G376100--Sobic004G141100 Sobic009G145600 Sobic009G145600 Sobic003G376100--Sobic009G145600 Sobic008G066401 Sobic008G066401 Sobic003G376100--Sobic008G066401 Sobic009G145700 Sobic009G145700 Sobic003G376100--Sobic009G145700 Sobic009G200566 Sobic009G200566 Sobic003G376100--Sobic009G200566 Sobic003G426600 Sobic003G426600 Sobic003G376100--Sobic003G426600 Sobic006G008000 Sobic006G008000 Sobic003G376100--Sobic006G008000 Sobic006G054800 Sobic006G054800 Sobic003G376100--Sobic006G054800 Sobic003G043500 Sobic003G043500 Sobic003G376100--Sobic003G043500 Sobic002G351300 Sobic002G351300 Sobic004G141100--Sobic002G351300 Sobic006G235100 Sobic006G235100 Sobic004G141100--Sobic006G235100 Sobic010G082600 Sobic010G082600 Sobic004G141100--Sobic010G082600 Sobic007G017500 Sobic007G017500 Sobic004G141100--Sobic007G017500 Sobic006G075400 Sobic006G075400 Sobic004G141100--Sobic006G075400 Sobic008G009400 Sobic008G009400 Sobic004G141100--Sobic008G009400 Sobic004G141100--Sobic006G054800 Sobic004G141100--Sobic006G008000 Sobic004G141100--Sobic008G066401 Sobic009G145600--Sobic009G145700 Sobic009G145600--Sobic008G066401 Sobic008G066200 Sobic008G066200 Sobic009G145600--Sobic008G066200 Sobic003G079200 Sobic003G079200 Sobic009G145600--Sobic003G079200 Sobic009G145600--Sobic006G008000 Sobic009G145600--Sobic003G043500 Sobic004G245700 Sobic004G245700 Sobic009G145600--Sobic004G245700 Sobic002G012500 Sobic002G012500 Sobic009G145600--Sobic002G012500 Sobic009G145600--Sobic009G200566 Sobic008G066401--Sobic009G145700 Sobic008G066401--Sobic009G145600 Sobic008G066401--Sobic008G066200 Sobic008G066401--Sobic002G012500 Sobic007G169700 Sobic007G169700 Sobic008G066401--Sobic007G169700 Sobic009G184000 Sobic009G184000 Sobic008G066401--Sobic009G184000 Sobic008G066401--Sobic006G008000 Sobic008G066401--Sobic003G043500 Sobic003G362700 Sobic003G362700 Sobic008G066401--Sobic003G362700 Sobic009G145700--Sobic009G145600 Sobic009G145700--Sobic008G066401 Sobic009G145700--Sobic008G066200 Sobic009G145700--Sobic006G008000 Sobic001G112200 Sobic001G112200 Sobic009G145700--Sobic001G112200 Sobic003G043600 Sobic003G043600 Sobic009G145700--Sobic003G043600 Sobic009G145700--Sobic003G043500 Sobic009G145700--Sobic009G184000 Sobic009G145700--Sobic003G079200 Sobic009G200566--Sobic009G145700 Sobic009G200566--Sobic009G145600 Sobic009G200566--Sobic001G112200 Sobic008G158800 Sobic008G158800 Sobic009G200566--Sobic008G158800 Sobic009G200566--Sobic008G066401 Sobic009G184100 Sobic009G184100 Sobic009G200566--Sobic009G184100 Sobic009G200566--Sobic004G245700 Sobic009G200566--Sobic008G066200 Sobic002G055700 Sobic002G055700 Sobic009G200566--Sobic002G055700 Sobic003G426600--Sobic006G008000 Sobic003G426600--Sobic002G012500 Sobic008G022000 Sobic008G022000 Sobic003G426600--Sobic008G022000 Sobic002G012300 Sobic002G012300 Sobic003G426600--Sobic002G012300 Sobic003G426600--Sobic010G082600 Sobic009G171500 Sobic009G171500 Sobic003G426600--Sobic009G171500 Sobic010G196000 Sobic010G196000 Sobic003G426600--Sobic010G196000 Sobic003G426600--Sobic008G066200 Sobic003G426600--Sobic004G141100 Sobic006G008000--Sobic008G066200 Sobic006G008000--Sobic002G012500 Sobic006G008000--Sobic003G079200 Sobic005G086600 Sobic005G086600 Sobic006G008000--Sobic005G086600 Sobic006G008000--Sobic002G012300 Sobic006G008000--Sobic009G145600 Sobic006G008000--Sobic009G145700 Sobic006G008000--Sobic008G022000 Sobic006G008000--Sobic008G066401 Sobic008G139600 Sobic008G139600 Sobic006G054800--Sobic008G139600 Sobic006G054800--Sobic003G043500 Sobic006G054800--Sobic009G145700 Sobic006G054800--Sobic007G169700 Sobic006G054800--Sobic004G141100 Sobic006G054800--Sobic009G145600 Sobic006G054800--Sobic001G112200 Sobic006G054800--Sobic008G066401 Sobic006G054800--Sobic009G184000 Sobic003G043500--Sobic009G145600 Sobic003G043500--Sobic008G066401 Sobic003G043500--Sobic009G145700 Sobic003G043500--Sobic006G054800 Sobic003G043500--Sobic007G169700 Sobic003G043500--Sobic008G139600 Sobic003G043500--Sobic004G245700 Sobic003G043500--Sobic001G112200 Sobic003G043500--Sobic009G184000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.