Gene annotation
Transcriptome id Sobic.004G080800.1
Synonym Sb04g006670
Functional annotation EF hand family protein, putative, expressed
UniProt C5XXI2
Pfam PF13405 PF13499
Panther DB PTHR10891 PTHR10891:SF574
NCBI CDD KOG0027; Calmodulin and related proteins (EF-Hand superfamily)
KEGG Orthology K13448; calcium-binding protein CML
Gene Ontology GO:0005509; calcium ion binding


Orthologs (automatic annotation)
TAIR AT4G26470 : Calcium-binding EF-hand family protein
RAP-DB (Rice) LOC_Os02g10470.1 : EF hand family protein, putative, expressed
MaizeGDB (Corn) Zm00025a019597 , Zm00025a034647
Brachypodium KQK17711 , KQK17712
Barley HORVU6Hr1G032960.2 , HORVU6Hr1G032960.3 , HORVU6Hr1G032960.6 , HORVU6Hr1G032960.4 , HORVU6Hr1G032960.5 , HORVU6Hr1G032960.1
Wheat TraesCS6A02G160600 , TraesCS6D02G152100 , TraesCS6B02G190700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G140100 - -
2 Sobic.010G271600 exo70 exocyst complex subunit family protein, putative, expressed -
3 Sobic.009G098400 rho GDP-dissociation inhibitor 1, putative, expressed K12462: ARHGDI, Rho GDP-dissociation inhibitor
4 Sobic.006G173400 actin-depolymerizing factor, putative, expressed K05765: cofilin
5 Sobic.004G187400 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
6 Sobic.010G190500 - -
7 Sobic.010G257800 peptidyl-prolyl cis-trans isomerase, putative, expressed -
8 Sobic.002G061300 OsFBX239 - F-box domain containing protein, expressed -
9 Sobic.005G214700 - -
10 Sobic.008G102850 - -
11 Sobic.001G278100 serine/threonine-protein kinase, putative, expressed -
12 Sobic.002G128700 expressed protein -
13 Sobic.006G127800 armadillo/beta-catenin repeat family protein, putative, expressed -
14 Sobic.007G103000 FGGY family of carbohydrate kinases, putative, expressed K00864: glpK, glycerol kinase
15 Sobic.005G065300 methyltransferase, putative, expressed -
16 Sobic.006G234400 DUF617 domain containing protein, expressed -
17 Sobic.007G134260 - -
18 Sobic.004G091000 pectate lyase precursor, putative, expressed K01728: pectate lyase
19 Sobic.003G147700 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
20 Sobic.003G114800 invertase/pectin methylesterase inhibitor family protein, putative, expressed -


Gene co-expression network
sample Sobic004G080800 Sobic004G080800 Sobic010G140100 Sobic010G140100 Sobic004G080800--Sobic010G140100 Sobic010G271600 Sobic010G271600 Sobic004G080800--Sobic010G271600 Sobic009G098400 Sobic009G098400 Sobic004G080800--Sobic009G098400 Sobic006G173400 Sobic006G173400 Sobic004G080800--Sobic006G173400 Sobic004G187400 Sobic004G187400 Sobic004G080800--Sobic004G187400 Sobic010G190500 Sobic010G190500 Sobic004G080800--Sobic010G190500 Sobic010G257800 Sobic010G257800 Sobic004G080800--Sobic010G257800 Sobic002G061300 Sobic002G061300 Sobic004G080800--Sobic002G061300 Sobic005G214700 Sobic005G214700 Sobic004G080800--Sobic005G214700 Sobic001G278100 Sobic001G278100 Sobic010G140100--Sobic001G278100 Sobic001G479700 Sobic001G479700 Sobic010G140100--Sobic001G479700 Sobic006G127800 Sobic006G127800 Sobic010G140100--Sobic006G127800 Sobic003G114900 Sobic003G114900 Sobic010G140100--Sobic003G114900 Sobic006G234400 Sobic006G234400 Sobic010G140100--Sobic006G234400 Sobic010G140100--Sobic004G080800 Sobic010G140100--Sobic006G173400 Sobic006G270800 Sobic006G270800 Sobic010G140100--Sobic006G270800 Sobic003G114800 Sobic003G114800 Sobic010G140100--Sobic003G114800 Sobic010G271600--Sobic009G098400 Sobic010G271600--Sobic004G187400 Sobic010G271600--Sobic005G214700 Sobic010G271600--Sobic010G190500 Sobic008G102850 Sobic008G102850 Sobic010G271600--Sobic008G102850 Sobic010G271600--Sobic006G173400 Sobic005G065300 Sobic005G065300 Sobic010G271600--Sobic005G065300 Sobic007G103000 Sobic007G103000 Sobic010G271600--Sobic007G103000 Sobic002G304300 Sobic002G304300 Sobic010G271600--Sobic002G304300 Sobic009G098400--Sobic004G187400 Sobic009G098400--Sobic010G271600 Sobic009G098400--Sobic005G214700 Sobic009G098400--Sobic010G190500 Sobic006G022700 Sobic006G022700 Sobic009G098400--Sobic006G022700 Sobic009G098400--Sobic008G102850 Sobic009G098400--Sobic002G304300 Sobic003G009600 Sobic003G009600 Sobic009G098400--Sobic003G009600 Sobic006G215500 Sobic006G215500 Sobic009G098400--Sobic006G215500 Sobic006G173400--Sobic003G114800 Sobic004G091000 Sobic004G091000 Sobic006G173400--Sobic004G091000 Sobic005G000200 Sobic005G000200 Sobic006G173400--Sobic005G000200 Sobic002G128700 Sobic002G128700 Sobic006G173400--Sobic002G128700 Sobic006G173400--Sobic008G102850 Sobic008G079200 Sobic008G079200 Sobic006G173400--Sobic008G079200 Sobic003G147700 Sobic003G147700 Sobic006G173400--Sobic003G147700 Sobic006G173400--Sobic007G103000 Sobic006G173400--Sobic005G065300 Sobic004G187400--Sobic009G098400 Sobic004G187400--Sobic010G271600 Sobic004G187400--Sobic005G214700 Sobic004G187400--Sobic006G022700 Sobic004G187400--Sobic010G190500 Sobic004G187400--Sobic008G102850 Sobic004G187400--Sobic002G304300 Sobic003G405800 Sobic003G405800 Sobic004G187400--Sobic003G405800 Sobic004G187400--Sobic006G173400 Sobic010G190500--Sobic005G214700 Sobic007G222200 Sobic007G222200 Sobic010G190500--Sobic007G222200 Sobic005G122100 Sobic005G122100 Sobic010G190500--Sobic005G122100 Sobic009G090400 Sobic009G090400 Sobic010G190500--Sobic009G090400 Sobic010G190500--Sobic003G009600 Sobic010G190500--Sobic007G103000 Sobic010G190500--Sobic010G271600 Sobic002G417401 Sobic002G417401 Sobic010G190500--Sobic002G417401 Sobic010G190500--Sobic008G102850 Sobic010G257800--Sobic010G271600 Sobic010G257800--Sobic006G173400 Sobic010G257800--Sobic002G128700 Sobic010G257800--Sobic004G187400 Sobic010G257800--Sobic009G098400 Sobic010G257800--Sobic008G102850 Sobic010G257800--Sobic010G190500 Sobic009G253700 Sobic009G253700 Sobic010G257800--Sobic009G253700 Sobic010G257800--Sobic005G214700 Sobic006G032000 Sobic006G032000 Sobic002G061300--Sobic006G032000 Sobic002G061300--Sobic002G128700 Sobic002G061300--Sobic006G173400 Sobic002G061300--Sobic010G271600 Sobic002G061300--Sobic008G102850 Sobic002G061300--Sobic004G091000 Sobic002G061300--Sobic007G103000 Sobic002G061300--Sobic008G079200 Sobic002G061300--Sobic005G000200 Sobic005G214700--Sobic009G090400 Sobic002G157900 Sobic002G157900 Sobic005G214700--Sobic002G157900 Sobic005G214700--Sobic008G102850 Sobic005G214700--Sobic010G190500 Sobic005G214700--Sobic005G122100 Sobic005G214700--Sobic007G222200 Sobic005G214700--Sobic009G098400 Sobic005G214700--Sobic003G009600 Sobic001G024300 Sobic001G024300 Sobic005G214700--Sobic001G024300
Octagon: transcription factors


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