Gene annotation
Transcriptome id Sobic.004G095100.1
Synonym Sb04g007840
Functional annotation zinc knuckle family protein, expressed
UniProt A0A1Z5RMG2
Pfam PF00271 PF14111 PF00270
Panther DB PTHR24031 PTHR24031:SF259
NCBI CDD KOG0328; Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily
KEGG Orthology K03257; translation initiation factor 4A
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G13920 : eukaryotic translation initiation factor 4A1
RAP-DB (Rice) LOC_Os02g12840.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G053500 expressed protein -
2 Sobic.010G121700 plastocyanin-like domain containing protein, putative, expressed -
3 Sobic.009G110700 OsFBL58 - F-box domain and LRR containing protein, expressed -
4 Sobic.009G234900 WRKY43, expressed -
5 Sobic.009G060000 WD40-like domain containing protein, putative, expressed -
6 Sobic.001G167300 - -
7 Sobic.008G024200 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
8 Sobic.003G004000 - -
9 Sobic.005G189100 transcription factor Dp, putative, expressed -
10 Sobic.004G192600 LTPL85 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
11 Sobic.001G089300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@periplasmic beta-glucosidase precursor, putative, expressed K05349: beta-glucosidase
12 Sobic.009G047100 GEX1, putative, expressed -
13 Sobic.001G089400 ammonium transporter protein, putative, expressed K03320: amt, AMT, ammonium transporter, Amt family
14 Sobic.006G070032 - K01193: INV, beta-fructofuranosidase
15 Sobic.008G138400 expressed protein -
16 Sobic.009G182100 cysteine proteinase inhibitor precursor protein, putative, expressed -
17 Sobic.002G006200 - -
18 Sobic.002G156400 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@MDR-like ABC transporter, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
19 Sobic.007G204200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
20 Sobic.004G100300 plastocyanin-like domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G095100 Sobic004G095100 Sobic001G053500 Sobic001G053500 Sobic004G095100--Sobic001G053500 Sobic010G121700 Sobic010G121700 Sobic004G095100--Sobic010G121700 Sobic009G110700 Sobic009G110700 Sobic004G095100--Sobic009G110700 Sobic009G234900 Sobic009G234900 Sobic004G095100--Sobic009G234900 Sobic009G060000 Sobic009G060000 Sobic004G095100--Sobic009G060000 Sobic001G167300 Sobic001G167300 Sobic004G095100--Sobic001G167300 Sobic008G024200 Sobic008G024200 Sobic004G095100--Sobic008G024200 Sobic003G004000 Sobic003G004000 Sobic004G095100--Sobic003G004000 Sobic005G189100 Sobic005G189100 Sobic004G095100--Sobic005G189100 Sobic001G053500--Sobic009G110700 Sobic003G245300 Sobic003G245300 Sobic001G053500--Sobic003G245300 Sobic001G192300 Sobic001G192300 Sobic001G053500--Sobic001G192300 Sobic007G122600 Sobic007G122600 Sobic001G053500--Sobic007G122600 Sobic005G006100 Sobic005G006100 Sobic001G053500--Sobic005G006100 Sobic001G053500--Sobic009G060000 Sobic010G216100 Sobic010G216100 Sobic001G053500--Sobic010G216100 Sobic002G049700 Sobic002G049700 Sobic001G053500--Sobic002G049700 Sobic010G207800 Sobic010G207800 Sobic001G053500--Sobic010G207800 Sobic010G121700--Sobic009G234900 Sobic010G121700--Sobic005G189100 Sobic010G121700--Sobic008G024200 Sobic001G089300 Sobic001G089300 Sobic010G121700--Sobic001G089300 Sobic009G047100 Sobic009G047100 Sobic010G121700--Sobic009G047100 Sobic002G006200 Sobic002G006200 Sobic010G121700--Sobic002G006200 Sobic002G156400 Sobic002G156400 Sobic010G121700--Sobic002G156400 Sobic008G138400 Sobic008G138400 Sobic010G121700--Sobic008G138400 Sobic002G097300 Sobic002G097300 Sobic010G121700--Sobic002G097300 Sobic009G110700--Sobic003G245300 Sobic009G110700--Sobic007G122600 Sobic009G110700--Sobic008G024200 Sobic009G110700--Sobic009G047100 Sobic009G110700--Sobic005G006100 Sobic009G110700--Sobic001G167300 Sobic009G110700--Sobic010G216100 Sobic009G110700--Sobic010G207800 Sobic009G110700--Sobic001G192300 Sobic009G234900--Sobic005G189100 Sobic009G234900--Sobic010G121700 Sobic009G234900--Sobic001G089300 Sobic009G234900--Sobic008G024200 Sobic009G234900--Sobic002G006200 Sobic009G234900--Sobic009G047100 Sobic009G234900--Sobic008G138400 Sobic009G234900--Sobic002G156400 Sobic001G143700 Sobic001G143700 Sobic009G234900--Sobic001G143700 Sobic009G158300 Sobic009G158300 Sobic009G060000--Sobic009G158300 Sobic009G060000--Sobic002G049700 Sobic001G409000 Sobic001G409000 Sobic009G060000--Sobic001G409000 Sobic007G001800 Sobic007G001800 Sobic009G060000--Sobic007G001800 Sobic003G445600 Sobic003G445600 Sobic009G060000--Sobic003G445600 Sobic003G160600 Sobic003G160600 Sobic009G060000--Sobic003G160600 Sobic006G164800 Sobic006G164800 Sobic009G060000--Sobic006G164800 Sobic007G145500 Sobic007G145500 Sobic009G060000--Sobic007G145500 Sobic009G016900 Sobic009G016900 Sobic009G060000--Sobic009G016900 Sobic001G167300--Sobic003G004000 Sobic001G167300--Sobic005G006100 Sobic001G167300--Sobic010G207800 Sobic001G167300--Sobic007G122600 Sobic001G167300--Sobic008G024200 Sobic004G192600 Sobic004G192600 Sobic001G167300--Sobic004G192600 Sobic001G089400 Sobic001G089400 Sobic001G167300--Sobic001G089400 Sobic001G167300--Sobic009G234900 Sobic001G167300--Sobic005G189100 Sobic008G024200--Sobic009G047100 Sobic008G024200--Sobic009G234900 Sobic008G024200--Sobic010G121700 Sobic008G024200--Sobic005G189100 Sobic008G024200--Sobic002G006200 Sobic008G024200--Sobic001G089300 Sobic008G024200--Sobic001G143700 Sobic008G024200--Sobic001G167300 Sobic008G024200--Sobic008G138400 Sobic003G004000--Sobic001G167300 Sobic003G004000--Sobic004G192600 Sobic003G004000--Sobic001G089400 Sobic008G043200 Sobic008G043200 Sobic003G004000--Sobic008G043200 Sobic003G004000--Sobic008G024200 Sobic003G004000--Sobic010G207800 Sobic003G004000--Sobic010G121700 Sobic003G004000--Sobic005G006100 Sobic003G004000--Sobic009G234900 Sobic005G189100--Sobic002G006200 Sobic005G189100--Sobic001G089300 Sobic005G189100--Sobic009G234900 Sobic005G189100--Sobic008G138400 Sobic005G189100--Sobic001G143700 Sobic005G189100--Sobic002G097300 Sobic005G189100--Sobic010G121700 Sobic005G189100--Sobic008G024200 Sobic005G189100--Sobic002G156400
Octagon: transcription factors


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