Gene annotation
Transcriptome id Sobic.004G164300.1
Synonym
Functional annotation -
UniProt A0A194YQ16
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G301000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expansin precursor, putative, expressed -
2 Sobic.008G010500 peroxidase precursor, putative, expressed K00430: peroxidase
3 Sobic.001G014700 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
4 Sobic.001G231800 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
5 Sobic.008G164450 - -
6 Sobic.005G202300 integral membrane protein TIGR01569 containing protein, expressed -
7 Sobic.004G121600 expansin precursor, putative, expressed -
8 Sobic.005G119900 reticuline oxidase-like protein precursor, putative, expressed -
9 Sobic.006G251400 heavy metal-associated domain containing protein, expressed -
10 Sobic.003G053200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
11 Sobic.004G029400 periplasmic beta-glucosidase precursor, putative, expressed K05349: beta-glucosidase
12 Sobic.003G280000 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
13 Sobic.003G441700 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
14 Sobic.003G319400 receptor protein kinase, putative, expressed -
15 Sobic.005G206000 dirigent, putative, expressed -
16 Sobic.007G037600 C4-dicarboxylate transporter/malic acid transport protein, expressed -
17 Sobic.006G106900 "cell wall modification, deposition of casparian strips, endodermis, transmembrane"(PubMedID : 24920445)@membrane associated DUF588 domain containing protein, putative, expressed -
18 Sobic.009G181600 indole-3-acetate beta-glucosyltransferase, putative, expressed -
19 Sobic.001G246700 O-methyltransferase, putative, expressed -
20 Sobic.007G186500 resistance protein, putative, expressed -


Gene co-expression network
sample Sobic004G164300 Sobic004G164300 Sobic001G301000 Sobic001G301000 Sobic004G164300--Sobic001G301000 Sobic008G010500 Sobic008G010500 Sobic004G164300--Sobic008G010500 Sobic001G014700 Sobic001G014700 Sobic004G164300--Sobic001G014700 Sobic001G231800 Sobic001G231800 Sobic004G164300--Sobic001G231800 Sobic008G164450 Sobic008G164450 Sobic004G164300--Sobic008G164450 Sobic005G202300 Sobic005G202300 Sobic004G164300--Sobic005G202300 Sobic004G121600 Sobic004G121600 Sobic004G164300--Sobic004G121600 Sobic005G119900 Sobic005G119900 Sobic004G164300--Sobic005G119900 Sobic006G251400 Sobic006G251400 Sobic004G164300--Sobic006G251400 Sobic001G301000--Sobic001G231800 Sobic001G301000--Sobic008G010500 Sobic001G301000--Sobic004G121600 Sobic003G441700 Sobic003G441700 Sobic001G301000--Sobic003G441700 Sobic001G301000--Sobic005G119900 Sobic003G053200 Sobic003G053200 Sobic001G301000--Sobic003G053200 Sobic010G268700 Sobic010G268700 Sobic001G301000--Sobic010G268700 Sobic010G245400 Sobic010G245400 Sobic001G301000--Sobic010G245400 Sobic006G097900 Sobic006G097900 Sobic001G301000--Sobic006G097900 Sobic008G010500--Sobic001G301000 Sobic008G010500--Sobic001G231800 Sobic008G010500--Sobic004G121600 Sobic008G010500--Sobic010G268700 Sobic008G010500--Sobic005G119900 Sobic005G206000 Sobic005G206000 Sobic008G010500--Sobic005G206000 Sobic008G010500--Sobic003G441700 Sobic008G010500--Sobic010G245400 Sobic008G010500--Sobic003G053200 Sobic003G280000 Sobic003G280000 Sobic001G014700--Sobic003G280000 Sobic001G014700--Sobic001G301000 Sobic002G366200 Sobic002G366200 Sobic001G014700--Sobic002G366200 Sobic010G147200 Sobic010G147200 Sobic001G014700--Sobic010G147200 Sobic001G014700--Sobic005G119900 Sobic003G353200 Sobic003G353200 Sobic001G014700--Sobic003G353200 Sobic001G014700--Sobic005G202300 Sobic001G014700--Sobic008G164450 Sobic001G014700--Sobic008G010500 Sobic001G231800--Sobic001G301000 Sobic001G231800--Sobic008G010500 Sobic001G231800--Sobic010G245400 Sobic001G231800--Sobic005G119900 Sobic001G231800--Sobic003G441700 Sobic001G231800--Sobic004G121600 Sobic001G231800--Sobic003G053200 Sobic001G231800--Sobic010G268700 Sobic003G357700 Sobic003G357700 Sobic001G231800--Sobic003G357700 Sobic009G181600 Sobic009G181600 Sobic008G164450--Sobic009G181600 Sobic001G506800 Sobic001G506800 Sobic008G164450--Sobic001G506800 Sobic006G092700 Sobic006G092700 Sobic008G164450--Sobic006G092700 Sobic002G146000 Sobic002G146000 Sobic008G164450--Sobic002G146000 Sobic010G113100 Sobic010G113100 Sobic008G164450--Sobic010G113100 Sobic006G135300 Sobic006G135300 Sobic008G164450--Sobic006G135300 Sobic010G028100 Sobic010G028100 Sobic008G164450--Sobic010G028100 Sobic006G003600 Sobic006G003600 Sobic008G164450--Sobic006G003600 Sobic007G037600 Sobic007G037600 Sobic008G164450--Sobic007G037600 Sobic006G106900 Sobic006G106900 Sobic005G202300--Sobic006G106900 Sobic003G319400 Sobic003G319400 Sobic005G202300--Sobic003G319400 Sobic005G202300--Sobic003G280000 Sobic005G202300--Sobic009G181600 Sobic005G202300--Sobic003G053200 Sobic010G031700 Sobic010G031700 Sobic005G202300--Sobic010G031700 Sobic005G202300--Sobic003G353200 Sobic004G029400 Sobic004G029400 Sobic005G202300--Sobic004G029400 Sobic001G058300 Sobic001G058300 Sobic005G202300--Sobic001G058300 Sobic004G121600--Sobic003G441700 Sobic004G121600--Sobic001G301000 Sobic004G121600--Sobic006G097900 Sobic004G121600--Sobic005G119900 Sobic004G121600--Sobic003G053200 Sobic003G441800 Sobic003G441800 Sobic004G121600--Sobic003G441800 Sobic004G121600--Sobic008G010500 Sobic001G218400 Sobic001G218400 Sobic004G121600--Sobic001G218400 Sobic004G121800 Sobic004G121800 Sobic004G121600--Sobic004G121800 Sobic005G119900--Sobic003G441700 Sobic005G119900--Sobic001G301000 Sobic001G181600 Sobic001G181600 Sobic005G119900--Sobic001G181600 Sobic005G119900--Sobic004G121600 Sobic005G119900--Sobic003G441800 Sobic005G119900--Sobic003G053200 Sobic003G154500 Sobic003G154500 Sobic005G119900--Sobic003G154500 Sobic009G055300 Sobic009G055300 Sobic005G119900--Sobic009G055300 Sobic005G119900--Sobic001G231800 Sobic002G042200 Sobic002G042200 Sobic006G251400--Sobic002G042200 Sobic006G122800 Sobic006G122800 Sobic006G251400--Sobic006G122800 Sobic006G251400--Sobic001G058300 Sobic006G174300 Sobic006G174300 Sobic006G251400--Sobic006G174300 Sobic007G050200 Sobic007G050200 Sobic006G251400--Sobic007G050200 Sobic003G351600 Sobic003G351600 Sobic006G251400--Sobic003G351600 Sobic002G101400 Sobic002G101400 Sobic006G251400--Sobic002G101400 Sobic006G251400--Sobic004G164300 Sobic006G251400--Sobic010G113100
Octagon: transcription factors


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