Gene annotation
Transcriptome id Sobic.004G246300.1,Sobic.004G246300.2
Synonym Sb04g028620
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
membrane attack complex component/perforin/complement C9, putative, expressed
UniProt A0A1Z5RPI0 , C5XZ93
Pfam PF01823
Panther DB PTHR33199 PTHR33199:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G14780 : MAC/Perforin domain-containing protein
RAP-DB (Rice) LOC_Os02g50340.1 : membrane attack complex component/perforin/complement C9, putative, expressed
MaizeGDB (Corn) Zm00025a049356 , Zm00025a021961
Brachypodium KQK18727 , KQK02019 , PNT69685 , PNT69684 , PNT69687 , PNT69686 , KQK02022 , KQK02021 , KQK02020 , KQK02023 , PNT69688
Barley HORVU6Hr1G074210.8 , HORVU6Hr1G074210.9 , HORVU6Hr1G074210.2 , HORVU6Hr1G074210.3 , HORVU6Hr1G074210.1 , HORVU6Hr1G074210.6 , HORVU6Hr1G074210.7 , HORVU6Hr1G074210.4 , HORVU6Hr1G074210.5 , HORVU6Hr1G074210.17 , HORVU6Hr1G074210.15 , HORVU6Hr1G074210.18 , HORVU6Hr1G074210.19 , HORVU6Hr1G074210.10 , HORVU6Hr1G074210.11 , HORVU6Hr1G074210.12 , HORVU6Hr1G074210.13 , HORVU6Hr1G074210.14 , HORVU6Hr1G074210.16
Wheat TraesCS6B02G328600 , TraesCS6B02G328600 , TraesCS6A02G299100 , TraesCS6A02G299100 , TraesCS6D02G278800 , TraesCS6D02G278800 , TraesCS6D02G278800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G379700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
2 Sobic.002G277700 expressed protein -
3 Sobic.009G204800 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed -
4 Sobic.007G133600 cytochrome P450 72A1, putative, expressed K10717: cytokinin trans-hydroxylase
5 Sobic.010G194500 expansin precursor, putative, expressed -
6 Sobic.001G005000 receptor protein kinase, putative, expressed -
7 Sobic.007G015400 a_IG002N01.7, putative, expressed -
8 Sobic.002G032900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@erythronate-4-phosphate dehydrogenase domain containing protein, expressed K15919: glyoxylate/hydroxypyruvate reductase
9 Sobic.001G239400 hsp20/alpha crystallin family protein, putative, expressed -
10 Sobic.001G373500 BTBN6 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
11 Sobic.004G153700 expressed protein -
12 Sobic.004G046400 rhodanese-like domain containing protein, putative, expressed -
13 Sobic.001G189500 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed -
14 Sobic.004G249700 plastocyanin-like domain containing protein, putative, expressed -
15 Sobic.006G154200 sulfotransferase domain containing protein, expressed K01025: sulfotransferase
16 Sobic.007G124400 UNE2, putative, expressed -
17 Sobic.009G076800 GIL1, putative, expressed -
18 Sobic.003G226100 expressed protein -
19 Sobic.006G166700 plastocyanin-like domain containing protein, putative, expressed -
20 Sobic.009G008300 expressed protein -


Gene co-expression network
sample Sobic004G246300 Sobic004G246300 Sobic002G379700 Sobic002G379700 Sobic004G246300--Sobic002G379700 Sobic002G277700 Sobic002G277700 Sobic004G246300--Sobic002G277700 Sobic009G204800 Sobic009G204800 Sobic004G246300--Sobic009G204800 Sobic007G133600 Sobic007G133600 Sobic004G246300--Sobic007G133600 Sobic010G194500 Sobic010G194500 Sobic004G246300--Sobic010G194500 Sobic001G005000 Sobic001G005000 Sobic004G246300--Sobic001G005000 Sobic007G015400 Sobic007G015400 Sobic004G246300--Sobic007G015400 Sobic002G032900 Sobic002G032900 Sobic004G246300--Sobic002G032900 Sobic001G239400 Sobic001G239400 Sobic004G246300--Sobic001G239400 Sobic004G046400 Sobic004G046400 Sobic002G379700--Sobic004G046400 Sobic002G379700--Sobic004G246300 Sobic002G379700--Sobic002G032900 Sobic010G204200 Sobic010G204200 Sobic002G379700--Sobic010G204200 Sobic007G108700 Sobic007G108700 Sobic002G379700--Sobic007G108700 Sobic008G019900 Sobic008G019900 Sobic002G379700--Sobic008G019900 Sobic001G375200 Sobic001G375200 Sobic002G379700--Sobic001G375200 Sobic009G183800 Sobic009G183800 Sobic002G379700--Sobic009G183800 Sobic006G092200 Sobic006G092200 Sobic002G379700--Sobic006G092200 Sobic001G189500 Sobic001G189500 Sobic002G277700--Sobic001G189500 Sobic002G277700--Sobic009G204800 Sobic001G373500 Sobic001G373500 Sobic002G277700--Sobic001G373500 Sobic002G277700--Sobic004G246300 Sobic002G277700--Sobic001G005000 Sobic005G035000 Sobic005G035000 Sobic002G277700--Sobic005G035000 Sobic004G153700 Sobic004G153700 Sobic002G277700--Sobic004G153700 Sobic002G277700--Sobic010G194500 Sobic003G226100 Sobic003G226100 Sobic002G277700--Sobic003G226100 Sobic009G204800--Sobic003G226100 Sobic009G204800--Sobic004G153700 Sobic009G204800--Sobic010G194500 Sobic007G206700 Sobic007G206700 Sobic009G204800--Sobic007G206700 Sobic003G083700 Sobic003G083700 Sobic009G204800--Sobic003G083700 Sobic002G001300 Sobic002G001300 Sobic009G204800--Sobic002G001300 Sobic009G204800--Sobic002G277700 Sobic010G008000 Sobic010G008000 Sobic009G204800--Sobic010G008000 Sobic009G204800--Sobic001G005000 Sobic009G008300 Sobic009G008300 Sobic007G133600--Sobic009G008300 Sobic002G245900 Sobic002G245900 Sobic007G133600--Sobic002G245900 Sobic007G133600--Sobic001G239400 Sobic007G133600--Sobic001G005000 Sobic004G249700 Sobic004G249700 Sobic007G133600--Sobic004G249700 Sobic006G166700 Sobic006G166700 Sobic007G133600--Sobic006G166700 Sobic004G288400 Sobic004G288400 Sobic007G133600--Sobic004G288400 Sobic003G057600 Sobic003G057600 Sobic007G133600--Sobic003G057600 Sobic010G087200 Sobic010G087200 Sobic007G133600--Sobic010G087200 Sobic010G194500--Sobic001G005000 Sobic010G194500--Sobic004G153700 Sobic006G018900 Sobic006G018900 Sobic010G194500--Sobic006G018900 Sobic010G194500--Sobic003G226100 Sobic010G194500--Sobic009G204800 Sobic009G076800 Sobic009G076800 Sobic010G194500--Sobic009G076800 Sobic010G194500--Sobic010G008000 Sobic010G194500--Sobic007G206700 Sobic010G194500--Sobic004G249700 Sobic001G005000--Sobic010G194500 Sobic001G005000--Sobic009G076800 Sobic001G005000--Sobic006G166700 Sobic001G005000--Sobic001G239400 Sobic001G005000--Sobic006G018900 Sobic001G005000--Sobic004G249700 Sobic010G014300 Sobic010G014300 Sobic001G005000--Sobic010G014300 Sobic001G005000--Sobic007G133600 Sobic001G462100 Sobic001G462100 Sobic001G005000--Sobic001G462100 Sobic007G015400--Sobic003G083700 Sobic003G265300 Sobic003G265300 Sobic007G015400--Sobic003G265300 Sobic001G029900 Sobic001G029900 Sobic007G015400--Sobic001G029900 Sobic006G156500 Sobic006G156500 Sobic007G015400--Sobic006G156500 Sobic004G355401 Sobic004G355401 Sobic007G015400--Sobic004G355401 Sobic008G083650 Sobic008G083650 Sobic007G015400--Sobic008G083650 Sobic002G367850 Sobic002G367850 Sobic007G015400--Sobic002G367850 Sobic005G066800 Sobic005G066800 Sobic007G015400--Sobic005G066800 Sobic007G206550 Sobic007G206550 Sobic007G015400--Sobic007G206550 Sobic002G032900--Sobic009G008300 Sobic004G121200 Sobic004G121200 Sobic002G032900--Sobic004G121200 Sobic002G032900--Sobic004G249700 Sobic002G032900--Sobic007G133600 Sobic002G032900--Sobic002G379700 Sobic002G032900--Sobic003G057600 Sobic001G144300 Sobic001G144300 Sobic002G032900--Sobic001G144300 Sobic002G032900--Sobic002G277700 Sobic002G032900--Sobic004G246300 Sobic001G239400--Sobic001G005000 Sobic001G239400--Sobic007G133600 Sobic001G239400--Sobic004G249700 Sobic001G239400--Sobic006G166700 Sobic001G239400--Sobic004G288400 Sobic001G239400--Sobic009G008300 Sobic001G239400--Sobic009G076800 Sobic001G239400--Sobic010G194500 Sobic006G003000 Sobic006G003000 Sobic001G239400--Sobic006G003000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.