Gene annotation
Transcriptome id Sobic.002G032900.3
Synonym Sb02g002850
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
erythronate-4-phosphate dehydrogenase domain containing protein, expressed
UniProt A0A1W0W262
Pfam PF00389 PF02826
Panther DB PTHR10996 PTHR10996:SF147
NCBI CDD KOG0069; Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily)
KEGG Orthology K15919; glyoxylate/hydroxypyruvate reductase
Gene Ontology GO:0016616; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT1G12550 : D-isomer specific 2-hydroxyacid dehydrogenase family protein
RAP-DB (Rice) LOC_Os04g01674.1 : erythronate-4-phosphate dehydrogenase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a045000
Brachypodium -
Barley HORVU2Hr1G005140.8 , HORVU2Hr1G005140.9 , HORVU2Hr1G005140.2 , HORVU2Hr1G005140.3 , HORVU2Hr1G005140.1 , HORVU2Hr1G005140.6 , HORVU2Hr1G005140.7 , HORVU2Hr1G005140.4 , HORVU2Hr1G005140.5 , HORVU2Hr1G005140.18 , HORVU2Hr1G005140.19 , HORVU2Hr1G005140.10 , HORVU2Hr1G005140.11 , HORVU2Hr1G005140.12 , HORVU2Hr1G005140.13 , HORVU2Hr1G005140.14 , HORVU2Hr1G005140.15 , HORVU2Hr1G005140.16 , HORVU2Hr1G005140.17
Wheat TraesCS2B02G041700 , TraesCS2D02G030900 , TraesCS2A02G028600
Populus -


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cDNA sequences
Sobic.002G032900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G008300 expressed protein -
2 Sobic.004G121200 GDSL-like lipase/acylhydrolase, putative, expressed -
3 Sobic.004G249700 plastocyanin-like domain containing protein, putative, expressed -
4 Sobic.007G133600 cytochrome P450 72A1, putative, expressed K10717: cytokinin trans-hydroxylase
5 Sobic.002G379700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
6 Sobic.003G057600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.001G144300 acetyltransferase, GNAT family, putative, expressed -
8 Sobic.002G277700 expressed protein -
9 Sobic.004G246300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@membrane attack complex component/perforin/complement C9, putative, expressed -
10 Sobic.010G083400 gibberellin receptor GID1L2, putative, expressed -
11 Sobic.003G121100 peroxidase precursor, putative, expressed K00430: peroxidase
12 Sobic.001G395800 SMP-30/Gluconolaconase/LRE domain protein, putative, expressed -
13 Sobic.001G239400 hsp20/alpha crystallin family protein, putative, expressed -
14 Sobic.003G399600 LTPL38 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
15 Sobic.009G183800 ICE-like protease p20 domain containing protein, putative, expressed -
16 Sobic.002G245900 AGC_PVPK_like_CDK8.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
17 Sobic.001G005000 receptor protein kinase, putative, expressed -
18 Sobic.008G016000 major facilitator superfamily antiporter, putative, expressed -
19 Sobic.003G269600 "CYP711A family, the cytochrome P450 homepage. Catalyzed the conversion of carlactone (CL) to carlactonoic acid (CLA)."(PubMedID : 33793911)@Synthesized carlactonoic acid (CLA) from carlactone (CL).(PubMedID : 34970291)@cytochrome P450, putative, expressed -
20 Sobic.010G212500 - -


Gene co-expression network
sample Sobic002G032900 Sobic002G032900 Sobic009G008300 Sobic009G008300 Sobic002G032900--Sobic009G008300 Sobic004G121200 Sobic004G121200 Sobic002G032900--Sobic004G121200 Sobic004G249700 Sobic004G249700 Sobic002G032900--Sobic004G249700 Sobic007G133600 Sobic007G133600 Sobic002G032900--Sobic007G133600 Sobic002G379700 Sobic002G379700 Sobic002G032900--Sobic002G379700 Sobic003G057600 Sobic003G057600 Sobic002G032900--Sobic003G057600 Sobic001G144300 Sobic001G144300 Sobic002G032900--Sobic001G144300 Sobic002G277700 Sobic002G277700 Sobic002G032900--Sobic002G277700 Sobic004G246300 Sobic004G246300 Sobic002G032900--Sobic004G246300 Sobic002G245900 Sobic002G245900 Sobic009G008300--Sobic002G245900 Sobic009G008300--Sobic007G133600 Sobic009G008300--Sobic003G057600 Sobic009G008300--Sobic004G249700 Sobic001G239400 Sobic001G239400 Sobic009G008300--Sobic001G239400 Sobic001G076800 Sobic001G076800 Sobic009G008300--Sobic001G076800 Sobic004G042700 Sobic004G042700 Sobic009G008300--Sobic004G042700 Sobic009G008300--Sobic002G032900 Sobic001G395800 Sobic001G395800 Sobic009G008300--Sobic001G395800 Sobic003G000100 Sobic003G000100 Sobic004G121200--Sobic003G000100 Sobic004G322100 Sobic004G322100 Sobic004G121200--Sobic004G322100 Sobic007G158800 Sobic007G158800 Sobic004G121200--Sobic007G158800 Sobic008G016000 Sobic008G016000 Sobic004G121200--Sobic008G016000 Sobic006G089000 Sobic006G089000 Sobic004G121200--Sobic006G089000 Sobic003G140700 Sobic003G140700 Sobic004G121200--Sobic003G140700 Sobic006G003100 Sobic006G003100 Sobic004G121200--Sobic006G003100 Sobic002G183700 Sobic002G183700 Sobic004G121200--Sobic002G183700 Sobic010G152400 Sobic010G152400 Sobic004G121200--Sobic010G152400 Sobic004G249700--Sobic001G239400 Sobic001G005000 Sobic001G005000 Sobic004G249700--Sobic001G005000 Sobic010G194500 Sobic010G194500 Sobic004G249700--Sobic010G194500 Sobic004G249700--Sobic009G008300 Sobic004G249700--Sobic007G133600 Sobic009G076800 Sobic009G076800 Sobic004G249700--Sobic009G076800 Sobic006G166700 Sobic006G166700 Sobic004G249700--Sobic006G166700 Sobic004G107900 Sobic004G107900 Sobic004G249700--Sobic004G107900 Sobic006G018900 Sobic006G018900 Sobic004G249700--Sobic006G018900 Sobic007G133600--Sobic009G008300 Sobic007G133600--Sobic002G245900 Sobic007G133600--Sobic001G239400 Sobic007G133600--Sobic001G005000 Sobic007G133600--Sobic004G249700 Sobic007G133600--Sobic006G166700 Sobic004G288400 Sobic004G288400 Sobic007G133600--Sobic004G288400 Sobic007G133600--Sobic003G057600 Sobic010G087200 Sobic010G087200 Sobic007G133600--Sobic010G087200 Sobic004G046400 Sobic004G046400 Sobic002G379700--Sobic004G046400 Sobic002G379700--Sobic004G246300 Sobic002G379700--Sobic002G032900 Sobic010G204200 Sobic010G204200 Sobic002G379700--Sobic010G204200 Sobic007G108700 Sobic007G108700 Sobic002G379700--Sobic007G108700 Sobic008G019900 Sobic008G019900 Sobic002G379700--Sobic008G019900 Sobic001G375200 Sobic001G375200 Sobic002G379700--Sobic001G375200 Sobic009G183800 Sobic009G183800 Sobic002G379700--Sobic009G183800 Sobic006G092200 Sobic006G092200 Sobic002G379700--Sobic006G092200 Sobic003G057600--Sobic009G008300 Sobic003G360600 Sobic003G360600 Sobic003G057600--Sobic003G360600 Sobic001G161601 Sobic001G161601 Sobic003G057600--Sobic001G161601 Sobic002G050400 Sobic002G050400 Sobic003G057600--Sobic002G050400 Sobic003G057600--Sobic001G395800 Sobic001G161500 Sobic001G161500 Sobic003G057600--Sobic001G161500 Sobic001G112100 Sobic001G112100 Sobic003G057600--Sobic001G112100 Sobic006G172550 Sobic006G172550 Sobic003G057600--Sobic006G172550 Sobic003G399600 Sobic003G399600 Sobic003G057600--Sobic003G399600 Sobic001G144300--Sobic004G249700 Sobic001G144300--Sobic007G133600 Sobic001G144300--Sobic009G008300 Sobic001G144300--Sobic002G032900 Sobic010G143900 Sobic010G143900 Sobic001G144300--Sobic010G143900 Sobic001G144300--Sobic006G018900 Sobic001G144300--Sobic001G005000 Sobic001G144300--Sobic001G239400 Sobic001G144300--Sobic004G107900 Sobic001G189500 Sobic001G189500 Sobic002G277700--Sobic001G189500 Sobic009G204800 Sobic009G204800 Sobic002G277700--Sobic009G204800 Sobic001G373500 Sobic001G373500 Sobic002G277700--Sobic001G373500 Sobic002G277700--Sobic004G246300 Sobic002G277700--Sobic001G005000 Sobic005G035000 Sobic005G035000 Sobic002G277700--Sobic005G035000 Sobic004G153700 Sobic004G153700 Sobic002G277700--Sobic004G153700 Sobic002G277700--Sobic010G194500 Sobic003G226100 Sobic003G226100 Sobic002G277700--Sobic003G226100 Sobic004G246300--Sobic002G379700 Sobic004G246300--Sobic002G277700 Sobic004G246300--Sobic009G204800 Sobic004G246300--Sobic007G133600 Sobic004G246300--Sobic010G194500 Sobic004G246300--Sobic001G005000 Sobic007G015400 Sobic007G015400 Sobic004G246300--Sobic007G015400 Sobic004G246300--Sobic002G032900 Sobic004G246300--Sobic001G239400
Octagon: transcription factors


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