Gene annotation
Transcriptome id Sobic.004G247600.2
Synonym NUDT18, Sb04g028750, atnudt18
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
hydrolase, NUDIX family, domain containing protein, expressed
UniProt A0A1Z5RNY6
Pfam PF00293
Panther DB PTHR12629 PTHR12629:SF4
NCBI CDD KOG2839; Diadenosine and diphosphoinositol polyphosphate phosphohydrolase
KEGG Orthology K07766; diphosphoinositol-polyphosphate diphosphatase
Gene Ontology GO:0016787; hydrolase activity


Orthologs (automatic annotation)
TAIR AT1G14860 : nudix hydrolase homolog 18
RAP-DB (Rice) LOC_Os02g50130.1 : hydrolase, NUDIX family, domain containing protein, expressed
MaizeGDB (Corn) Zm00025a032668 , Zm00025a021942
Brachypodium KQK01581
Barley HORVU7Hr1G041500.1 , HORVU6Hr1G073660.2 , HORVU6Hr1G073660.3 , HORVU6Hr1G073660.1
Wheat TraesCS6A02G296400 , TraesCS6B02G326200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G353900 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
2 Sobic.006G143400 expressed protein -
3 Sobic.006G158600 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
4 Sobic.009G221400 B3 DNA binding domain containing protein, expressed K09287: RAV-like factor
5 Sobic.001G281400 expressed protein -
6 Sobic.003G041600 DUF623 domain containing protein, expressed -
7 Sobic.010G259600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Os)(PubMedID : 27208977)@transferase family protein, putative, expressed -
8 Sobic.007G155000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
9 Sobic.007G025500 amino acid transporter, putative, expressed -
10 Sobic.001G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.009G008900 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
12 Sobic.010G136000 expressed protein -
13 Sobic.009G139400 expressed protein -
14 Sobic.006G045500 OsFBO3 - F-box and other domain containing protein, expressed -
15 Sobic.002G302500 -(PubMedID : 29147737)@serine/threonine-protein kinase receptor precursor, putative, expressed -
16 Sobic.010G066700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein anthranilate N-benzoyltransferase protein 1 (Os)(PubMedID : 27208977)@transferase family protein, putative, expressed -
17 Sobic.001G477600 zinc finger protein, putative, expressed -
18 Sobic.009G234100 WRKY49, expressed -
19 Sobic.001G038900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF567 domain containing protein, putative, expressed -
20 Sobic.008G044300 U-box domain-containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G247600 Sobic004G247600 Sobic002G353900 Sobic002G353900 Sobic004G247600--Sobic002G353900 Sobic006G143400 Sobic006G143400 Sobic004G247600--Sobic006G143400 Sobic006G158600 Sobic006G158600 Sobic004G247600--Sobic006G158600 Sobic009G221400 Sobic009G221400 Sobic004G247600--Sobic009G221400 Sobic001G281400 Sobic001G281400 Sobic004G247600--Sobic001G281400 Sobic003G041600 Sobic003G041600 Sobic004G247600--Sobic003G041600 Sobic010G259600 Sobic010G259600 Sobic004G247600--Sobic010G259600 Sobic007G155000 Sobic007G155000 Sobic004G247600--Sobic007G155000 Sobic007G025500 Sobic007G025500 Sobic004G247600--Sobic007G025500 Sobic002G055700 Sobic002G055700 Sobic002G353900--Sobic002G055700 Sobic003G382600 Sobic003G382600 Sobic002G353900--Sobic003G382600 Sobic001G367600 Sobic001G367600 Sobic002G353900--Sobic001G367600 Sobic002G302500 Sobic002G302500 Sobic002G353900--Sobic002G302500 Sobic002G192000 Sobic002G192000 Sobic002G353900--Sobic002G192000 Sobic002G353900--Sobic009G221400 Sobic009G139400 Sobic009G139400 Sobic002G353900--Sobic009G139400 Sobic002G353900--Sobic006G158600 Sobic009G234100 Sobic009G234100 Sobic002G353900--Sobic009G234100 Sobic005G005600 Sobic005G005600 Sobic006G143400--Sobic005G005600 Sobic006G143400--Sobic003G041600 Sobic009G159400 Sobic009G159400 Sobic006G143400--Sobic009G159400 Sobic006G143400--Sobic010G259600 Sobic008G185400 Sobic008G185400 Sobic006G143400--Sobic008G185400 Sobic004G075000 Sobic004G075000 Sobic006G143400--Sobic004G075000 Sobic003G364300 Sobic003G364300 Sobic006G143400--Sobic003G364300 Sobic007G166000 Sobic007G166000 Sobic006G143400--Sobic007G166000 Sobic001G449600 Sobic001G449600 Sobic006G143400--Sobic001G449600 Sobic008G136400 Sobic008G136400 Sobic006G158600--Sobic008G136400 Sobic006G158600--Sobic002G192000 Sobic002G140400 Sobic002G140400 Sobic006G158600--Sobic002G140400 Sobic002G333400 Sobic002G333400 Sobic006G158600--Sobic002G333400 Sobic006G056400 Sobic006G056400 Sobic006G158600--Sobic006G056400 Sobic001G038900 Sobic001G038900 Sobic006G158600--Sobic001G038900 Sobic001G423800 Sobic001G423800 Sobic006G158600--Sobic001G423800 Sobic002G336600 Sobic002G336600 Sobic006G158600--Sobic002G336600 Sobic004G243100 Sobic004G243100 Sobic006G158600--Sobic004G243100 Sobic009G221400--Sobic002G353900 Sobic009G221400--Sobic003G041600 Sobic009G221400--Sobic006G158600 Sobic008G044300 Sobic008G044300 Sobic009G221400--Sobic008G044300 Sobic009G221400--Sobic002G336600 Sobic001G477600 Sobic001G477600 Sobic009G221400--Sobic001G477600 Sobic004G208700 Sobic004G208700 Sobic009G221400--Sobic004G208700 Sobic009G070400 Sobic009G070400 Sobic009G221400--Sobic009G070400 Sobic009G221400--Sobic002G192000 Sobic004G187900 Sobic004G187900 Sobic001G281400--Sobic004G187900 Sobic002G267500 Sobic002G267500 Sobic001G281400--Sobic002G267500 Sobic010G149300 Sobic010G149300 Sobic001G281400--Sobic010G149300 Sobic002G190900 Sobic002G190900 Sobic001G281400--Sobic002G190900 Sobic002G046100 Sobic002G046100 Sobic001G281400--Sobic002G046100 Sobic010G086200 Sobic010G086200 Sobic001G281400--Sobic010G086200 Sobic009G141800 Sobic009G141800 Sobic001G281400--Sobic009G141800 Sobic009G008900 Sobic009G008900 Sobic001G281400--Sobic009G008900 Sobic001G499300 Sobic001G499300 Sobic001G281400--Sobic001G499300 Sobic003G041600--Sobic009G221400 Sobic003G041600--Sobic008G044300 Sobic003G041600--Sobic006G143400 Sobic009G069800 Sobic009G069800 Sobic003G041600--Sobic009G069800 Sobic003G041600--Sobic003G364300 Sobic001G091600 Sobic001G091600 Sobic003G041600--Sobic001G091600 Sobic010G166500 Sobic010G166500 Sobic003G041600--Sobic010G166500 Sobic003G041600--Sobic001G477600 Sobic010G156500 Sobic010G156500 Sobic003G041600--Sobic010G156500 Sobic010G259600--Sobic009G159400 Sobic003G352300 Sobic003G352300 Sobic010G259600--Sobic003G352300 Sobic010G259600--Sobic009G234100 Sobic002G125700 Sobic002G125700 Sobic010G259600--Sobic002G125700 Sobic007G087200 Sobic007G087200 Sobic010G259600--Sobic007G087200 Sobic009G231000 Sobic009G231000 Sobic010G259600--Sobic009G231000 Sobic001G435000 Sobic001G435000 Sobic010G259600--Sobic001G435000 Sobic003G255200 Sobic003G255200 Sobic010G259600--Sobic003G255200 Sobic002G017800 Sobic002G017800 Sobic010G259600--Sobic002G017800 Sobic007G155000--Sobic001G435000 Sobic007G155000--Sobic004G208700 Sobic007G155000--Sobic009G234100 Sobic007G155000--Sobic009G159400 Sobic007G155000--Sobic002G140400 Sobic004G229800 Sobic004G229800 Sobic007G155000--Sobic004G229800 Sobic007G155000--Sobic001G038900 Sobic010G066700 Sobic010G066700 Sobic007G155000--Sobic010G066700 Sobic007G155000--Sobic010G259600 Sobic002G034800 Sobic002G034800 Sobic007G025500--Sobic002G034800 Sobic001G119400 Sobic001G119400 Sobic007G025500--Sobic001G119400 Sobic003G297600 Sobic003G297600 Sobic007G025500--Sobic003G297600 Sobic002G366600 Sobic002G366600 Sobic007G025500--Sobic002G366600 Sobic007G025500--Sobic009G139400 Sobic007G025500--Sobic010G066700 Sobic009G183400 Sobic009G183400 Sobic007G025500--Sobic009G183400 Sobic009G077800 Sobic009G077800 Sobic007G025500--Sobic009G077800 Sobic010G136000 Sobic010G136000 Sobic007G025500--Sobic010G136000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.