Gene annotation
Transcriptome id Sobic.005G003700.1
Synonym
Functional annotation -
UniProt A0A1B6PPG6
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G043200 - -
2 Sobic.001G089400 ammonium transporter protein, putative, expressed K03320: amt, AMT, ammonium transporter, Amt family
3 Sobic.007G215200 "Ca ATPase, IIB type"(PubMedID : 22196357)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
4 Sobic.003G420500 Ca ATPase 3(PubMedID : 22196357)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
5 Sobic.010G207800 E1-E2 ATPase domain containing protein, expressed K01535: PMA1, H+-transporting ATPase
6 Sobic.001G332000 pollen allergen, putative, expressed -
7 Sobic.009G175400 vacuolar ATP synthase subunit E, putative, expressed K02150: ATPeV1E, V-type H+-transporting ATPase subunit E
8 Sobic.010G040400 polygalacturonase, putative, expressed -
9 Sobic.004G192600 LTPL85 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
10 Sobic.006G205400 villin protein, putative, expressed -
11 Sobic.005G145400 RNA recognition motif containing protein, putative, expressed -
12 Sobic.003G004000 - -
13 Sobic.010G276100 transporter family protein, putative, expressed -
14 Sobic.010G016200 expressed protein -
15 Sobic.001G329200 rab GDP dissociation inhibitor alpha, putative, expressed K17255: Rab GDP dissociation inhibitor
16 Sobic.001G287400 VQ domain containing protein, putative, expressed -
17 Sobic.001G261416 - K01858: INO1, myo-inositol-1-phosphate synthase
18 Sobic.001G167300 - -
19 Sobic.005G040700 amino acid permease family protein, putative, expressed -
20 Sobic.001G092500 protein kinase domain containing protein, expressed -


Gene co-expression network
sample Sobic005G003700 Sobic005G003700 Sobic008G043200 Sobic008G043200 Sobic005G003700--Sobic008G043200 Sobic001G089400 Sobic001G089400 Sobic005G003700--Sobic001G089400 Sobic007G215200 Sobic007G215200 Sobic005G003700--Sobic007G215200 Sobic003G420500 Sobic003G420500 Sobic005G003700--Sobic003G420500 Sobic010G207800 Sobic010G207800 Sobic005G003700--Sobic010G207800 Sobic001G332000 Sobic001G332000 Sobic005G003700--Sobic001G332000 Sobic009G175400 Sobic009G175400 Sobic005G003700--Sobic009G175400 Sobic010G040400 Sobic010G040400 Sobic005G003700--Sobic010G040400 Sobic004G192600 Sobic004G192600 Sobic005G003700--Sobic004G192600 Sobic010G016200 Sobic010G016200 Sobic008G043200--Sobic010G016200 Sobic005G145400 Sobic005G145400 Sobic008G043200--Sobic005G145400 Sobic008G043200--Sobic009G175400 Sobic008G043200--Sobic001G089400 Sobic008G043200--Sobic010G040400 Sobic008G043200--Sobic007G215200 Sobic001G092500 Sobic001G092500 Sobic008G043200--Sobic001G092500 Sobic008G043200--Sobic010G207800 Sobic008G043200--Sobic001G332000 Sobic001G089400--Sobic004G192600 Sobic003G004000 Sobic003G004000 Sobic001G089400--Sobic003G004000 Sobic001G089400--Sobic008G043200 Sobic001G167300 Sobic001G167300 Sobic001G089400--Sobic001G167300 Sobic005G037700 Sobic005G037700 Sobic001G089400--Sobic005G037700 Sobic001G089400--Sobic010G207800 Sobic001G089400--Sobic010G016200 Sobic001G089400--Sobic003G420500 Sobic001G089400--Sobic007G215200 Sobic007G215200--Sobic010G207800 Sobic001G261416 Sobic001G261416 Sobic007G215200--Sobic001G261416 Sobic007G215200--Sobic001G332000 Sobic010G090200 Sobic010G090200 Sobic007G215200--Sobic010G090200 Sobic001G329200 Sobic001G329200 Sobic007G215200--Sobic001G329200 Sobic001G287400 Sobic001G287400 Sobic007G215200--Sobic001G287400 Sobic007G014000 Sobic007G014000 Sobic007G215200--Sobic007G014000 Sobic001G171300 Sobic001G171300 Sobic007G215200--Sobic001G171300 Sobic010G216100 Sobic010G216100 Sobic007G215200--Sobic010G216100 Sobic003G420500--Sobic005G145400 Sobic003G420500--Sobic005G037700 Sobic003G420500--Sobic008G043200 Sobic001G525600 Sobic001G525600 Sobic003G420500--Sobic001G525600 Sobic003G420500--Sobic001G089400 Sobic003G420500--Sobic004G192600 Sobic004G099200 Sobic004G099200 Sobic003G420500--Sobic004G099200 Sobic003G420500--Sobic010G016200 Sobic007G197000 Sobic007G197000 Sobic003G420500--Sobic007G197000 Sobic010G207800--Sobic007G014000 Sobic010G207800--Sobic007G215200 Sobic010G207800--Sobic001G261416 Sobic010G207800--Sobic010G090200 Sobic010G207800--Sobic010G216100 Sobic005G006100 Sobic005G006100 Sobic010G207800--Sobic005G006100 Sobic010G240300 Sobic010G240300 Sobic010G207800--Sobic010G240300 Sobic010G207800--Sobic001G167300 Sobic010G207800--Sobic001G287400 Sobic001G332000--Sobic001G329200 Sobic001G130500 Sobic001G130500 Sobic001G332000--Sobic001G130500 Sobic003G175950 Sobic003G175950 Sobic001G332000--Sobic003G175950 Sobic005G040700 Sobic005G040700 Sobic001G332000--Sobic005G040700 Sobic001G332000--Sobic001G287400 Sobic001G332000--Sobic001G171300 Sobic010G051000 Sobic010G051000 Sobic001G332000--Sobic010G051000 Sobic001G269100 Sobic001G269100 Sobic001G332000--Sobic001G269100 Sobic001G332000--Sobic001G261416 Sobic010G276100 Sobic010G276100 Sobic009G175400--Sobic010G276100 Sobic010G144700 Sobic010G144700 Sobic009G175400--Sobic010G144700 Sobic009G175400--Sobic010G040400 Sobic009G082900 Sobic009G082900 Sobic009G175400--Sobic009G082900 Sobic009G175400--Sobic001G332000 Sobic009G175400--Sobic008G043200 Sobic009G175400--Sobic005G040700 Sobic001G288400 Sobic001G288400 Sobic009G175400--Sobic001G288400 Sobic009G175400--Sobic005G145400 Sobic010G040400--Sobic009G175400 Sobic010G040400--Sobic010G276100 Sobic010G040400--Sobic010G144700 Sobic010G040400--Sobic001G332000 Sobic010G040400--Sobic005G040700 Sobic010G040400--Sobic001G092500 Sobic010G040400--Sobic009G082900 Sobic010G040400--Sobic010G051000 Sobic010G040400--Sobic001G288400 Sobic004G192600--Sobic001G089400 Sobic004G192600--Sobic003G004000 Sobic004G192600--Sobic001G167300 Sobic004G192600--Sobic008G043200 Sobic004G192600--Sobic005G037700 Sobic004G192600--Sobic010G207800 Sobic004G192600--Sobic003G420500 Sobic004G192600--Sobic010G016200 Sobic004G192600--Sobic007G215200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.