Gene annotation
Transcriptome id Sobic.005G020900.2,Sobic.005G020900.1
Synonym Sb05g001780
Functional annotation ELMO/CED-12 family protein, putative, expressed
UniProt C5Y3Y8
Pfam PF04727
Panther DB PTHR12771 PTHR12771:SF25
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G03610 : ELMO/CED-12 family protein
RAP-DB (Rice) LOC_Os11g03530.1 : ELMO/CED-12 family protein, putative, expressed
MaizeGDB (Corn) Zm00025a033374
Brachypodium -
Barley HORVU4Hr1G026890.3 , HORVU4Hr1G026890.6 , HORVU4Hr1G026890.2 , HORVU4Hr1G026890.5 , HORVU4Hr1G026890.4
Wheat TraesCS4A02G188900
Populus -


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cDNA sequences
Sobic.005G020900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G261600 ubiquitin interaction motif family protein, expressed -
2 Sobic.002G262900 farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed K05955: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
3 Sobic.001G270400 OsPOP20 - Putative Prolyl Oligopeptidase homologue, expressed -
4 Sobic.005G059600 WD domain, G-beta repeat domain containing protein, expressed -
5 Sobic.008G032600 saposin-like type B, region 1 family protein, putative, expressed K12382: PSAP, saposin
6 Sobic.003G305200 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed K01126: E3.1.4.46, glpQ, glycerophosphoryl diester phosphodiesterase
7 Sobic.004G275700 adaptor complexes medium subunit family domain containing protein, expressed K11826: AP-2 complex subunit mu-1
8 Sobic.008G033500 nucleolar GTPase, putative, expressed -
9 Sobic.006G083600 expressed protein K10134: etoposide-induced 2.4 mRNA
10 Sobic.002G303600 -(PubMedID : 29147737)@RIN3, putative, expressed K10636: AMFR, autocrine motility factor receptor
11 Sobic.004G296400 amino acid permease, putative, expressed K03294: basic amino acid/polyamine antiporter, APA family
12 Sobic.003G422900 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
13 Sobic.001G047400 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
14 Sobic.010G149500 E1-BTB2 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed -
15 Sobic.010G164000 FYVE zinc finger domain containing protein, expressed -
16 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
17 Sobic.009G257200 CK1_CaseinKinase_1.8 - CK1 includes the casein kinase 1 kinases, expressed K02218: CSNK1, casein kinase 1
18 Sobic.002G008800 PTEN, putative, expressed K01110: phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN
19 Sobic.010G130200 BPI/LBP family protein At3g20270 precursor, putative, expressed K05399: lipopolysaccharide-binding protein
20 Sobic.010G020400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A


Gene co-expression network
sample Sobic005G020900 Sobic005G020900 Sobic010G261600 Sobic010G261600 Sobic005G020900--Sobic010G261600 Sobic002G262900 Sobic002G262900 Sobic005G020900--Sobic002G262900 Sobic001G270400 Sobic001G270400 Sobic005G020900--Sobic001G270400 Sobic005G059600 Sobic005G059600 Sobic005G020900--Sobic005G059600 Sobic008G032600 Sobic008G032600 Sobic005G020900--Sobic008G032600 Sobic003G305200 Sobic003G305200 Sobic005G020900--Sobic003G305200 Sobic004G275700 Sobic004G275700 Sobic005G020900--Sobic004G275700 Sobic008G033500 Sobic008G033500 Sobic005G020900--Sobic008G033500 Sobic006G083600 Sobic006G083600 Sobic005G020900--Sobic006G083600 Sobic003G338500 Sobic003G338500 Sobic010G261600--Sobic003G338500 Sobic002G303600 Sobic002G303600 Sobic010G261600--Sobic002G303600 Sobic002G008800 Sobic002G008800 Sobic010G261600--Sobic002G008800 Sobic004G228800 Sobic004G228800 Sobic010G261600--Sobic004G228800 Sobic004G323700 Sobic004G323700 Sobic010G261600--Sobic004G323700 Sobic010G261600--Sobic002G262900 Sobic009G228700 Sobic009G228700 Sobic010G261600--Sobic009G228700 Sobic010G261600--Sobic004G275700 Sobic010G020400 Sobic010G020400 Sobic010G261600--Sobic010G020400 Sobic002G262900--Sobic002G008800 Sobic002G262900--Sobic004G275700 Sobic010G164000 Sobic010G164000 Sobic002G262900--Sobic010G164000 Sobic006G136400 Sobic006G136400 Sobic002G262900--Sobic006G136400 Sobic004G039600 Sobic004G039600 Sobic002G262900--Sobic004G039600 Sobic010G205800 Sobic010G205800 Sobic002G262900--Sobic010G205800 Sobic002G262900--Sobic010G261600 Sobic003G155900 Sobic003G155900 Sobic002G262900--Sobic003G155900 Sobic001G124200 Sobic001G124200 Sobic002G262900--Sobic001G124200 Sobic007G024700 Sobic007G024700 Sobic001G270400--Sobic007G024700 Sobic009G094300 Sobic009G094300 Sobic001G270400--Sobic009G094300 Sobic001G270400--Sobic010G205800 Sobic003G109100 Sobic003G109100 Sobic001G270400--Sobic003G109100 Sobic001G137100 Sobic001G137100 Sobic001G270400--Sobic001G137100 Sobic002G270500 Sobic002G270500 Sobic001G270400--Sobic002G270500 Sobic001G121200 Sobic001G121200 Sobic001G270400--Sobic001G121200 Sobic004G052900 Sobic004G052900 Sobic001G270400--Sobic004G052900 Sobic001G199100 Sobic001G199100 Sobic001G270400--Sobic001G199100 Sobic004G351300 Sobic004G351300 Sobic005G059600--Sobic004G351300 Sobic006G271200 Sobic006G271200 Sobic005G059600--Sobic006G271200 Sobic005G059600--Sobic002G270500 Sobic006G237900 Sobic006G237900 Sobic005G059600--Sobic006G237900 Sobic004G177300 Sobic004G177300 Sobic005G059600--Sobic004G177300 Sobic005G059600--Sobic010G261600 Sobic005G059600--Sobic004G228800 Sobic001G273700 Sobic001G273700 Sobic005G059600--Sobic001G273700 Sobic004G016000 Sobic004G016000 Sobic005G059600--Sobic004G016000 Sobic010G049100 Sobic010G049100 Sobic008G032600--Sobic010G049100 Sobic008G156700 Sobic008G156700 Sobic008G032600--Sobic008G156700 Sobic004G080100 Sobic004G080100 Sobic008G032600--Sobic004G080100 Sobic009G133600 Sobic009G133600 Sobic008G032600--Sobic009G133600 Sobic005G168600 Sobic005G168600 Sobic008G032600--Sobic005G168600 Sobic003G110400 Sobic003G110400 Sobic008G032600--Sobic003G110400 Sobic003G055700 Sobic003G055700 Sobic008G032600--Sobic003G055700 Sobic006G244700 Sobic006G244700 Sobic008G032600--Sobic006G244700 Sobic008G032600--Sobic008G033500 Sobic003G305200--Sobic007G024700 Sobic010G130200 Sobic010G130200 Sobic003G305200--Sobic010G130200 Sobic001G427100 Sobic001G427100 Sobic003G305200--Sobic001G427100 Sobic003G305200--Sobic006G083600 Sobic002G132000 Sobic002G132000 Sobic003G305200--Sobic002G132000 Sobic004G295800 Sobic004G295800 Sobic003G305200--Sobic004G295800 Sobic003G305200--Sobic009G094300 Sobic003G305200--Sobic002G270500 Sobic003G329400 Sobic003G329400 Sobic003G305200--Sobic003G329400 Sobic004G275700--Sobic001G199100 Sobic001G091300 Sobic001G091300 Sobic004G275700--Sobic001G091300 Sobic009G075800 Sobic009G075800 Sobic004G275700--Sobic009G075800 Sobic004G275700--Sobic002G262900 Sobic001G007000 Sobic001G007000 Sobic004G275700--Sobic001G007000 Sobic004G275700--Sobic010G020400 Sobic004G275700--Sobic002G008800 Sobic003G365300 Sobic003G365300 Sobic004G275700--Sobic003G365300 Sobic003G012200 Sobic003G012200 Sobic004G275700--Sobic003G012200 Sobic008G033500--Sobic010G020400 Sobic001G014800 Sobic001G014800 Sobic008G033500--Sobic001G014800 Sobic001G333100 Sobic001G333100 Sobic008G033500--Sobic001G333100 Sobic002G020700 Sobic002G020700 Sobic008G033500--Sobic002G020700 Sobic007G162100 Sobic007G162100 Sobic008G033500--Sobic007G162100 Sobic006G127600 Sobic006G127600 Sobic008G033500--Sobic006G127600 Sobic003G422900 Sobic003G422900 Sobic008G033500--Sobic003G422900 Sobic009G068500 Sobic009G068500 Sobic008G033500--Sobic009G068500 Sobic001G193300 Sobic001G193300 Sobic008G033500--Sobic001G193300 Sobic006G083600--Sobic010G130200 Sobic006G083600--Sobic003G305200 Sobic002G189400 Sobic002G189400 Sobic006G083600--Sobic002G189400 Sobic010G264200 Sobic010G264200 Sobic006G083600--Sobic010G264200 Sobic006G083600--Sobic007G024700 Sobic006G083600--Sobic003G155900 Sobic006G083600--Sobic002G262900 Sobic006G083600--Sobic001G124200 Sobic004G113400 Sobic004G113400 Sobic006G083600--Sobic004G113400
Octagon: transcription factors


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