Gene annotation
Transcriptome id Sobic.005G139500.1
Synonym
Functional annotation -
UniProt A0A1B6PSC6
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G512800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
2 Sobic.010G248900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1
3 Sobic.001G298500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.010G107000 phosphatidylinositol-4-phosphate 5-Kinase family protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
5 Sobic.001G322700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@5-oxoprolinase, putative, expressed K01469: OPLAH, OXP1, 5-oxoprolinase (ATP-hydrolysing)
6 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
7 Sobic.004G016000 spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
8 Sobic.004G125900 ethylene-responsive protein related, putative, expressed -
9 Sobic.003G138200 expressed protein -
10 Sobic.002G156000 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed K14724: SLC9A8, solute carrier family 9 (sodium/hydrogen exchanger), member 8
11 Sobic.004G124200 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
12 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase
13 Sobic.003G226200 neutral ceramidase precursor, putative, expressed K12349: neutral ceramidase
14 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
15 Sobic.002G155400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed -
16 Sobic.002G215700 similar to Aldehyde dehydrogenase(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Aldehyde dehydrogenase B4(PubMedID : 26320239)@Zinc finger(C3H4-type Ring finger) family protein(PubMedID : 26320239)@a glutamate S-semialdehyde dehydrogenase(PubMedID : 26320239)@aldehyde dehydrogenase, putative, expressed K14085: aldehyde dehydrogenase family 7 member A1
17 Sobic.001G001400 expressed protein -
18 Sobic.010G163800 lectin protein kinase family protein, putative, expressed -
19 Sobic.003G149200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -
20 Sobic.002G266200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic005G139500 Sobic005G139500 Sobic001G512800 Sobic001G512800 Sobic005G139500--Sobic001G512800 Sobic010G248900 Sobic010G248900 Sobic005G139500--Sobic010G248900 Sobic001G298500 Sobic001G298500 Sobic005G139500--Sobic001G298500 Sobic010G107000 Sobic010G107000 Sobic005G139500--Sobic010G107000 Sobic001G322700 Sobic001G322700 Sobic005G139500--Sobic001G322700 Sobic007G068100 Sobic007G068100 Sobic005G139500--Sobic007G068100 Sobic004G016000 Sobic004G016000 Sobic005G139500--Sobic004G016000 Sobic004G125900 Sobic004G125900 Sobic005G139500--Sobic004G125900 Sobic003G138200 Sobic003G138200 Sobic005G139500--Sobic003G138200 Sobic001G512800--Sobic003G138200 Sobic002G322900 Sobic002G322900 Sobic001G512800--Sobic002G322900 Sobic010G206000 Sobic010G206000 Sobic001G512800--Sobic010G206000 Sobic004G246200 Sobic004G246200 Sobic001G512800--Sobic004G246200 Sobic002G409500 Sobic002G409500 Sobic001G512800--Sobic002G409500 Sobic009G029600 Sobic009G029600 Sobic001G512800--Sobic009G029600 Sobic001G512800--Sobic010G248900 Sobic009G054500 Sobic009G054500 Sobic001G512800--Sobic009G054500 Sobic005G079900 Sobic005G079900 Sobic001G512800--Sobic005G079900 Sobic001G249300 Sobic001G249300 Sobic010G248900--Sobic001G249300 Sobic006G030700 Sobic006G030700 Sobic010G248900--Sobic006G030700 Sobic010G248900--Sobic001G512800 Sobic005G018500 Sobic005G018500 Sobic010G248900--Sobic005G018500 Sobic010G248900--Sobic009G054500 Sobic003G259200 Sobic003G259200 Sobic010G248900--Sobic003G259200 Sobic001G280200 Sobic001G280200 Sobic010G248900--Sobic001G280200 Sobic009G226300 Sobic009G226300 Sobic010G248900--Sobic009G226300 Sobic006G100332 Sobic006G100332 Sobic010G248900--Sobic006G100332 Sobic009G000200 Sobic009G000200 Sobic001G298500--Sobic009G000200 Sobic009G079300 Sobic009G079300 Sobic001G298500--Sobic009G079300 Sobic006G271200 Sobic006G271200 Sobic001G298500--Sobic006G271200 Sobic001G350700 Sobic001G350700 Sobic001G298500--Sobic001G350700 Sobic008G189200 Sobic008G189200 Sobic001G298500--Sobic008G189200 Sobic004G004200 Sobic004G004200 Sobic001G298500--Sobic004G004200 Sobic001G298500--Sobic010G107000 Sobic007G092700 Sobic007G092700 Sobic001G298500--Sobic007G092700 Sobic006G125400 Sobic006G125400 Sobic001G298500--Sobic006G125400 Sobic009G211400 Sobic009G211400 Sobic010G107000--Sobic009G211400 Sobic001G325200 Sobic001G325200 Sobic010G107000--Sobic001G325200 Sobic009G193700 Sobic009G193700 Sobic010G107000--Sobic009G193700 Sobic003G355600 Sobic003G355600 Sobic010G107000--Sobic003G355600 Sobic003G219600 Sobic003G219600 Sobic010G107000--Sobic003G219600 Sobic001G150200 Sobic001G150200 Sobic010G107000--Sobic001G150200 Sobic010G107000--Sobic009G029600 Sobic010G107000--Sobic009G226300 Sobic010G107000--Sobic003G138200 Sobic003G329400 Sobic003G329400 Sobic001G322700--Sobic003G329400 Sobic001G322700--Sobic001G325200 Sobic001G322700--Sobic007G068100 Sobic009G057300 Sobic009G057300 Sobic001G322700--Sobic009G057300 Sobic004G101900 Sobic004G101900 Sobic001G322700--Sobic004G101900 Sobic001G322700--Sobic010G107000 Sobic003G149200 Sobic003G149200 Sobic001G322700--Sobic003G149200 Sobic001G015500 Sobic001G015500 Sobic001G322700--Sobic001G015500 Sobic002G304000 Sobic002G304000 Sobic001G322700--Sobic002G304000 Sobic007G068100--Sobic001G325200 Sobic001G474500 Sobic001G474500 Sobic007G068100--Sobic001G474500 Sobic003G388251 Sobic003G388251 Sobic007G068100--Sobic003G388251 Sobic003G148800 Sobic003G148800 Sobic007G068100--Sobic003G148800 Sobic007G068100--Sobic009G057300 Sobic007G068100--Sobic004G101900 Sobic003G428400 Sobic003G428400 Sobic007G068100--Sobic003G428400 Sobic007G068100--Sobic009G226300 Sobic004G321800 Sobic004G321800 Sobic007G068100--Sobic004G321800 Sobic004G351300 Sobic004G351300 Sobic004G016000--Sobic004G351300 Sobic004G209800 Sobic004G209800 Sobic004G016000--Sobic004G209800 Sobic010G072800 Sobic010G072800 Sobic004G016000--Sobic010G072800 Sobic002G156000 Sobic002G156000 Sobic004G016000--Sobic002G156000 Sobic005G059600 Sobic005G059600 Sobic004G016000--Sobic005G059600 Sobic007G075500 Sobic007G075500 Sobic004G016000--Sobic007G075500 Sobic002G270500 Sobic002G270500 Sobic004G016000--Sobic002G270500 Sobic009G133500 Sobic009G133500 Sobic004G016000--Sobic009G133500 Sobic003G089000 Sobic003G089000 Sobic004G016000--Sobic003G089000 Sobic001G415300 Sobic001G415300 Sobic004G125900--Sobic001G415300 Sobic004G125900--Sobic002G270500 Sobic009G126900 Sobic009G126900 Sobic004G125900--Sobic009G126900 Sobic004G125900--Sobic006G271200 Sobic003G331400 Sobic003G331400 Sobic004G125900--Sobic003G331400 Sobic004G125900--Sobic009G000200 Sobic001G107600 Sobic001G107600 Sobic004G125900--Sobic001G107600 Sobic002G031100 Sobic002G031100 Sobic004G125900--Sobic002G031100 Sobic006G034000 Sobic006G034000 Sobic004G125900--Sobic006G034000 Sobic003G138200--Sobic001G249300 Sobic003G138200--Sobic009G226300 Sobic007G187300 Sobic007G187300 Sobic003G138200--Sobic007G187300 Sobic003G138200--Sobic001G150200 Sobic003G138200--Sobic009G054500 Sobic003G138200--Sobic009G211400 Sobic002G215700 Sobic002G215700 Sobic003G138200--Sobic002G215700 Sobic004G260000 Sobic004G260000 Sobic003G138200--Sobic004G260000 Sobic003G138200--Sobic001G325200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.