Gene annotation
Transcriptome id Sobic.001G001400.2,Sobic.001G001400.3
Synonym Sb01g000280
Functional annotation expressed protein
UniProt A0A1Z5S3T7 , A0A1Z5S3R7
Pfam -
Panther DB PTHR31008 PTHR31008:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G43310 : COP1-interacting protein-related
RAP-DB (Rice) LOC_Os03g64320.1 : expressed protein
MaizeGDB (Corn) Zm00025a013561 , Zm00025a009159 , Zm00025a045820
Brachypodium PNT73742 , KQK11944 , KQK11943 , KQK16456
Barley HORVU5Hr1G125620.18 , HORVU5Hr1G125620.5 , HORVU5Hr1G125620.4 , HORVU5Hr1G125620.7 , HORVU5Hr1G125620.6 , HORVU5Hr1G125620.1 , HORVU5Hr1G125620.3 , HORVU5Hr1G125620.2 , HORVU5Hr1G125620.9 , HORVU5Hr1G125620.8 , HORVU5Hr1G125630.9 , HORVU5Hr1G125630.6 , HORVU5Hr1G125630.7 , HORVU5Hr1G125630.4 , HORVU5Hr1G125630.5 , HORVU5Hr1G125630.2 , HORVU5Hr1G125630.3 , HORVU5Hr1G125630.1 , HORVU5Hr1G125630.10 , HORVU5Hr1G125620.20 , HORVU5Hr1G125620.10 , HORVU5Hr1G125620.13 , HORVU5Hr1G125620.12 , HORVU5Hr1G125620.15 , HORVU5Hr1G125620.14 , HORVU5Hr1G125620.17 , HORVU5Hr1G125620.16 , HORVU5Hr1G125620.19 , HORVU5Hr1G125630.8
Wheat TraesCS5B02G568700 , TraesCS5B02G568700 , TraesCS5D02G560900 , TraesCS5D02G561000 , TraesCS5B02G568800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G093100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@galactosyltransferase family protein, putative, expressed K14413: beta-1,3-galactosyltransferase
2 Sobic.009G105900 amino acid permease family protein, putative, expressed K14427: SLC12A4_6, solute carrier family 12 (potassium/chloride transporter), member 4/6
3 Sobic.009G118900 expressed protein -
4 Sobic.004G236200 SEC6, putative, expressed K06110: EXOC3, exocyst complex component 3
5 Sobic.009G243800 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
6 Sobic.002G327000 villin protein, putative, expressed -
7 Sobic.004G209800 calcium-binding mitochondrial protein anon-60Da, putative, expressed K17800: LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial
8 Sobic.010G163800 lectin protein kinase family protein, putative, expressed -
9 Sobic.004G344901 - K10357: myosin V
10 Sobic.004G002100 G-protein alpha subunit, putative, expressed -
11 Sobic.008G003700 clathrin heavy chain, putative, expressed K04646: clathrin heavy chain
12 Sobic.002G031100 resistance protein LR10, putative, expressed -
13 Sobic.002G340900 ATMIN7, putative, expressed K13462: guanine nucleotide-exchange factor
14 Sobic.004G016000 spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
15 Sobic.001G437400 guanine nucleotide exchange family protein, putative, expressed K18442: ARFGEF, brefeldin A-inhibited guanine nucleotide-exchange protein
16 Sobic.004G147500 tetratricopeptide repeat domain containing protein, expressed K09667: protein O-GlcNAc transferase
17 Sobic.006G281000 methyltransferase, putative, expressed -
18 Sobic.002G156000 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed K14724: SLC9A8, solute carrier family 9 (sodium/hydrogen exchanger), member 8
19 Sobic.004G257200 phosphatidylinositol transfer, putative, expressed -
20 Sobic.002G137400 protein binding protein, putative, expressed -


Gene co-expression network
sample Sobic001G001400 Sobic001G001400 Sobic010G093100 Sobic010G093100 Sobic001G001400--Sobic010G093100 Sobic009G105900 Sobic009G105900 Sobic001G001400--Sobic009G105900 Sobic009G118900 Sobic009G118900 Sobic001G001400--Sobic009G118900 Sobic004G236200 Sobic004G236200 Sobic001G001400--Sobic004G236200 Sobic009G243800 Sobic009G243800 Sobic001G001400--Sobic009G243800 Sobic002G327000 Sobic002G327000 Sobic001G001400--Sobic002G327000 Sobic004G209800 Sobic004G209800 Sobic001G001400--Sobic004G209800 Sobic010G163800 Sobic010G163800 Sobic001G001400--Sobic010G163800 Sobic004G344901 Sobic004G344901 Sobic001G001400--Sobic004G344901 Sobic002G031100 Sobic002G031100 Sobic010G093100--Sobic002G031100 Sobic010G093100--Sobic001G001400 Sobic007G196900 Sobic007G196900 Sobic010G093100--Sobic007G196900 Sobic004G002100 Sobic004G002100 Sobic010G093100--Sobic004G002100 Sobic001G127200 Sobic001G127200 Sobic010G093100--Sobic001G127200 Sobic004G314700 Sobic004G314700 Sobic010G093100--Sobic004G314700 Sobic009G020900 Sobic009G020900 Sobic010G093100--Sobic009G020900 Sobic001G415300 Sobic001G415300 Sobic010G093100--Sobic001G415300 Sobic004G358400 Sobic004G358400 Sobic010G093100--Sobic004G358400 Sobic009G105900--Sobic002G327000 Sobic002G423500 Sobic002G423500 Sobic009G105900--Sobic002G423500 Sobic006G056200 Sobic006G056200 Sobic009G105900--Sobic006G056200 Sobic007G010900 Sobic007G010900 Sobic009G105900--Sobic007G010900 Sobic006G173200 Sobic006G173200 Sobic009G105900--Sobic006G173200 Sobic005G163700 Sobic005G163700 Sobic009G105900--Sobic005G163700 Sobic004G047200 Sobic004G047200 Sobic009G105900--Sobic004G047200 Sobic001G460500 Sobic001G460500 Sobic009G105900--Sobic001G460500 Sobic002G194800 Sobic002G194800 Sobic009G105900--Sobic002G194800 Sobic001G117800 Sobic001G117800 Sobic009G118900--Sobic001G117800 Sobic002G340900 Sobic002G340900 Sobic009G118900--Sobic002G340900 Sobic001G437400 Sobic001G437400 Sobic009G118900--Sobic001G437400 Sobic010G178600 Sobic010G178600 Sobic009G118900--Sobic010G178600 Sobic003G029600 Sobic003G029600 Sobic009G118900--Sobic003G029600 Sobic002G070600 Sobic002G070600 Sobic009G118900--Sobic002G070600 Sobic004G174700 Sobic004G174700 Sobic009G118900--Sobic004G174700 Sobic004G336300 Sobic004G336300 Sobic009G118900--Sobic004G336300 Sobic003G334700 Sobic003G334700 Sobic009G118900--Sobic003G334700 Sobic003G270600 Sobic003G270600 Sobic004G236200--Sobic003G270600 Sobic001G056800 Sobic001G056800 Sobic004G236200--Sobic001G056800 Sobic006G077300 Sobic006G077300 Sobic004G236200--Sobic006G077300 Sobic004G228800 Sobic004G228800 Sobic004G236200--Sobic004G228800 Sobic006G203300 Sobic006G203300 Sobic004G236200--Sobic006G203300 Sobic003G427600 Sobic003G427600 Sobic004G236200--Sobic003G427600 Sobic003G394200 Sobic003G394200 Sobic004G236200--Sobic003G394200 Sobic007G205900 Sobic007G205900 Sobic004G236200--Sobic007G205900 Sobic002G156000 Sobic002G156000 Sobic004G236200--Sobic002G156000 Sobic001G534800 Sobic001G534800 Sobic009G243800--Sobic001G534800 Sobic005G003300 Sobic005G003300 Sobic009G243800--Sobic005G003300 Sobic010G232600 Sobic010G232600 Sobic009G243800--Sobic010G232600 Sobic002G270500 Sobic002G270500 Sobic009G243800--Sobic002G270500 Sobic001G413900 Sobic001G413900 Sobic009G243800--Sobic001G413900 Sobic008G003700 Sobic008G003700 Sobic009G243800--Sobic008G003700 Sobic001G281100 Sobic001G281100 Sobic009G243800--Sobic001G281100 Sobic004G004300 Sobic004G004300 Sobic009G243800--Sobic004G004300 Sobic006G126100 Sobic006G126100 Sobic009G243800--Sobic006G126100 Sobic002G327000--Sobic004G344901 Sobic003G144300 Sobic003G144300 Sobic002G327000--Sobic003G144300 Sobic002G327000--Sobic009G105900 Sobic008G124800 Sobic008G124800 Sobic002G327000--Sobic008G124800 Sobic001G426600 Sobic001G426600 Sobic002G327000--Sobic001G426600 Sobic003G227100 Sobic003G227100 Sobic002G327000--Sobic003G227100 Sobic003G337300 Sobic003G337300 Sobic002G327000--Sobic003G337300 Sobic001G163400 Sobic001G163400 Sobic002G327000--Sobic001G163400 Sobic001G051700 Sobic001G051700 Sobic002G327000--Sobic001G051700 Sobic004G016000 Sobic004G016000 Sobic004G209800--Sobic004G016000 Sobic004G178300 Sobic004G178300 Sobic004G209800--Sobic004G178300 Sobic010G072800 Sobic010G072800 Sobic004G209800--Sobic010G072800 Sobic001G137000 Sobic001G137000 Sobic004G209800--Sobic001G137000 Sobic004G209800--Sobic002G156000 Sobic001G007100 Sobic001G007100 Sobic004G209800--Sobic001G007100 Sobic004G223300 Sobic004G223300 Sobic004G209800--Sobic004G223300 Sobic004G209800--Sobic001G413900 Sobic001G375600 Sobic001G375600 Sobic004G209800--Sobic001G375600 Sobic010G163800--Sobic004G016000 Sobic010G163800--Sobic001G001400 Sobic005G139500 Sobic005G139500 Sobic010G163800--Sobic005G139500 Sobic010G163800--Sobic004G209800 Sobic004G351300 Sobic004G351300 Sobic010G163800--Sobic004G351300 Sobic001G512800 Sobic001G512800 Sobic010G163800--Sobic001G512800 Sobic010G163800--Sobic001G056800 Sobic002G409500 Sobic002G409500 Sobic010G163800--Sobic002G409500 Sobic005G152000 Sobic005G152000 Sobic010G163800--Sobic005G152000 Sobic003G331400 Sobic003G331400 Sobic004G344901--Sobic003G331400 Sobic004G344901--Sobic003G337300 Sobic004G344901--Sobic001G163400 Sobic006G131000 Sobic006G131000 Sobic004G344901--Sobic006G131000 Sobic004G344901--Sobic004G004300 Sobic004G344901--Sobic001G415300 Sobic004G344901--Sobic008G003700 Sobic004G344901--Sobic001G281100 Sobic002G137400 Sobic002G137400 Sobic004G344901--Sobic002G137400
Octagon: transcription factors


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