Gene annotation
Transcriptome id Sobic.006G031200.1
Synonym Sb06g003190
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
DSBA-like thioredoxin domain containing protein, expressed
UniProt C5YD83
Pfam PF13462
Panther DB PTHR33875 PTHR33875:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G20225 : Thioredoxin superfamily protein
RAP-DB (Rice) LOC_Os04g15690.1 : DSBA-like thioredoxin domain containing protein, expressed
MaizeGDB (Corn) Zm00025a055601
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G031200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G109200 - -
2 Sobic.002G067300 ATPase, putative, expressed -
3 Sobic.006G021900 Multidrug resistence-associated protein 4(PubMedID : 26320239)@ABC transporter family protein, putative, expressed K05665: ATP-binding cassette, subfamily C (CFTR/MRP), member 1
4 Sobic.005G093400 expressed protein -
5 Sobic.003G428900 C2 domain containing protein, putative, expressed -
6 Sobic.001G331000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.006G228200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@receptor-like kinase, putative, expressed -
8 Sobic.006G014000 erythronate-4-phosphate dehydrogenase domain containing protein, expressed K15919: glyoxylate/hydroxypyruvate reductase
9 Sobic.004G349300 tyrosine protein kinase domain containing protein, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
10 Sobic.003G139000 aminotransferase, putative, expressed -
11 Sobic.007G158500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@patatin, putative, expressed -
12 Sobic.004G085500 OsFBK3 - F-box domain and kelch repeat containing protein, expressed -
13 Sobic.001G162200 expressed protein -
14 Sobic.007G157900 gibberellin receptor GID1L2, putative, expressed -
15 Sobic.002G323600 lipase class 3 family protein, putative, expressed -
16 Sobic.007G089900 4-Coumarate-CoA ligase(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
17 Sobic.002G418500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY47, expressed -
18 Sobic.010G019800 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
19 Sobic.005G000100 monoglyceride lipase, putative, expressed -
20 Sobic.008G074500 Probable leucine-rich repeat receptor-like protein kinase At5g49770(PubMedID : 31721651)@leucine-rich repeat family protein, putative, expressed -


Gene co-expression network
sample Sobic006G031200 Sobic006G031200 Sobic008G109200 Sobic008G109200 Sobic006G031200--Sobic008G109200 Sobic002G067300 Sobic002G067300 Sobic006G031200--Sobic002G067300 Sobic006G021900 Sobic006G021900 Sobic006G031200--Sobic006G021900 Sobic005G093400 Sobic005G093400 Sobic006G031200--Sobic005G093400 Sobic003G428900 Sobic003G428900 Sobic006G031200--Sobic003G428900 Sobic001G331000 Sobic001G331000 Sobic006G031200--Sobic001G331000 Sobic006G228200 Sobic006G228200 Sobic006G031200--Sobic006G228200 Sobic006G014000 Sobic006G014000 Sobic006G031200--Sobic006G014000 Sobic004G349300 Sobic004G349300 Sobic006G031200--Sobic004G349300 Sobic008G109200--Sobic006G031200 Sobic008G109200--Sobic005G093400 Sobic009G032100 Sobic009G032100 Sobic008G109200--Sobic009G032100 Sobic009G245700 Sobic009G245700 Sobic008G109200--Sobic009G245700 Sobic004G309500 Sobic004G309500 Sobic008G109200--Sobic004G309500 Sobic009G024600 Sobic009G024600 Sobic008G109200--Sobic009G024600 Sobic008G109200--Sobic004G349300 Sobic003G264901 Sobic003G264901 Sobic008G109200--Sobic003G264901 Sobic003G401400 Sobic003G401400 Sobic008G109200--Sobic003G401400 Sobic006G113000 Sobic006G113000 Sobic002G067300--Sobic006G113000 Sobic001G319200 Sobic001G319200 Sobic002G067300--Sobic001G319200 Sobic007G115500 Sobic007G115500 Sobic002G067300--Sobic007G115500 Sobic002G067300--Sobic006G021900 Sobic003G360200 Sobic003G360200 Sobic002G067300--Sobic003G360200 Sobic006G009000 Sobic006G009000 Sobic002G067300--Sobic006G009000 Sobic002G024000 Sobic002G024000 Sobic002G067300--Sobic002G024000 Sobic002G067300--Sobic006G031200 Sobic005G161100 Sobic005G161100 Sobic002G067300--Sobic005G161100 Sobic006G021900--Sobic005G093400 Sobic005G021950 Sobic005G021950 Sobic006G021900--Sobic005G021950 Sobic001G261600 Sobic001G261600 Sobic006G021900--Sobic001G261600 Sobic006G021900--Sobic002G067300 Sobic001G410450 Sobic001G410450 Sobic006G021900--Sobic001G410450 Sobic007G129201 Sobic007G129201 Sobic006G021900--Sobic007G129201 Sobic009G181300 Sobic009G181300 Sobic006G021900--Sobic009G181300 Sobic008G074500 Sobic008G074500 Sobic006G021900--Sobic008G074500 Sobic009G252100 Sobic009G252100 Sobic006G021900--Sobic009G252100 Sobic008G038100 Sobic008G038100 Sobic005G093400--Sobic008G038100 Sobic002G209100 Sobic002G209100 Sobic005G093400--Sobic002G209100 Sobic009G038200 Sobic009G038200 Sobic005G093400--Sobic009G038200 Sobic009G205600 Sobic009G205600 Sobic005G093400--Sobic009G205600 Sobic005G093400--Sobic004G349300 Sobic005G093400--Sobic003G264901 Sobic005G093400--Sobic001G410450 Sobic009G233900 Sobic009G233900 Sobic005G093400--Sobic009G233900 Sobic004G195800 Sobic004G195800 Sobic005G093400--Sobic004G195800 Sobic010G267200 Sobic010G267200 Sobic003G428900--Sobic010G267200 Sobic003G053600 Sobic003G053600 Sobic003G428900--Sobic003G053600 Sobic004G177000 Sobic004G177000 Sobic003G428900--Sobic004G177000 Sobic009G162300 Sobic009G162300 Sobic003G428900--Sobic009G162300 Sobic010G001300 Sobic010G001300 Sobic003G428900--Sobic010G001300 Sobic003G353200 Sobic003G353200 Sobic003G428900--Sobic003G353200 Sobic008G164450 Sobic008G164450 Sobic003G428900--Sobic008G164450 Sobic002G311501 Sobic002G311501 Sobic003G428900--Sobic002G311501 Sobic004G047600 Sobic004G047600 Sobic003G428900--Sobic004G047600 Sobic001G331000--Sobic006G228200 Sobic007G158500 Sobic007G158500 Sobic001G331000--Sobic007G158500 Sobic001G331000--Sobic002G067300 Sobic001G331000--Sobic006G031200 Sobic001G331000--Sobic006G021900 Sobic002G214500 Sobic002G214500 Sobic001G331000--Sobic002G214500 Sobic001G331000--Sobic003G428900 Sobic004G167300 Sobic004G167300 Sobic001G331000--Sobic004G167300 Sobic006G274500 Sobic006G274500 Sobic001G331000--Sobic006G274500 Sobic006G228200--Sobic001G331000 Sobic004G085500 Sobic004G085500 Sobic006G228200--Sobic004G085500 Sobic006G228200--Sobic006G031200 Sobic006G228200--Sobic006G021900 Sobic005G093500 Sobic005G093500 Sobic006G228200--Sobic005G093500 Sobic007G089900 Sobic007G089900 Sobic006G228200--Sobic007G089900 Sobic006G228200--Sobic010G001300 Sobic008G099600 Sobic008G099600 Sobic006G228200--Sobic008G099600 Sobic003G083200 Sobic003G083200 Sobic006G228200--Sobic003G083200 Sobic003G139000 Sobic003G139000 Sobic006G014000--Sobic003G139000 Sobic003G157700 Sobic003G157700 Sobic006G014000--Sobic003G157700 Sobic010G122800 Sobic010G122800 Sobic006G014000--Sobic010G122800 Sobic003G215200 Sobic003G215200 Sobic006G014000--Sobic003G215200 Sobic006G008400 Sobic006G008400 Sobic006G014000--Sobic006G008400 Sobic001G087900 Sobic001G087900 Sobic006G014000--Sobic001G087900 Sobic007G157900 Sobic007G157900 Sobic006G014000--Sobic007G157900 Sobic001G131100 Sobic001G131100 Sobic006G014000--Sobic001G131100 Sobic008G043700 Sobic008G043700 Sobic006G014000--Sobic008G043700 Sobic004G349300--Sobic005G093400 Sobic004G349300--Sobic009G245700 Sobic001G258000 Sobic001G258000 Sobic004G349300--Sobic001G258000 Sobic001G528300 Sobic001G528300 Sobic004G349300--Sobic001G528300 Sobic002G193400 Sobic002G193400 Sobic004G349300--Sobic002G193400 Sobic002G117200 Sobic002G117200 Sobic004G349300--Sobic002G117200 Sobic003G402200 Sobic003G402200 Sobic004G349300--Sobic003G402200 Sobic002G027700 Sobic002G027700 Sobic004G349300--Sobic002G027700 Sobic004G349300--Sobic009G205600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.