Gene annotation
Transcriptome id Sobic.002G067300.1,Sobic.002G067300.2
Synonym Sb02g005630
Functional annotation ATPase, putative, expressed
UniProt C5XC02 , A0A1B6Q9L9
Pfam PF00004 PF14363
Panther DB PTHR23070 PTHR23070:SF27
NCBI CDD KOG0743; AAA+-type ATPase
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT3G28510 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os01g19260.1 : ATPase, putative, expressed
MaizeGDB (Corn) Zm00025a016039 , Zm00025a052319 , Zm00025a045292 , Zm00025a004879 , Zm00025a004881 , Zm00025a008606
Brachypodium KQK15981 , KQJ85588 , KQK20482 , KQK20481 , KQJ85593 , KQJ85594 , KQK15975 , PNT76854 , PNT76855 , PNT76856 , PNT76857 , KQJ98547 , KQJ90344 , KQK20476 , KQK20475
Barley HORVU1Hr1G063390.3 , HORVU3Hr1G086670.1 , HORVU3Hr1G086670.2 , HORVU3Hr1G086670.3 , HORVU3Hr1G086670.4 , HORVU3Hr1G086670.5 , HORVU6Hr1G021770.3 , HORVU6Hr1G021770.2 , HORVU6Hr1G021770.1 , HORVU6Hr1G021770.4 , HORVU1Hr1G063390.4 , HORVU1Hr1G063390.5 , HORVU1Hr1G063390.1 , HORVU1Hr1G063390.2 , HORVU5Hr1G107410.2 , HORVU5Hr1G107410.3 , HORVU5Hr1G107410.4 , HORVU2Hr1G046180.3 , HORVU2Hr1G046180.2 , HORVU2Hr1G046180.1 , HORVU2Hr1G046180.5 , HORVU2Hr1G046180.4 , HORVU6Hr1G093350.1
Wheat TraesCS3A02G357100 , TraesCS2A02G221700 , TraesCS1D02G439500 , TraesCS1B02G465000 , TraesCS1A02G430200 , TraesCS3B02G389700 , TraesCS3D02G350900 , TraesCS2D02G227400 , TraesCS3D02G351000 , TraesCS2D02G227500 , TraesCS3A02G356800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G113000 Copper transport protein family("PubMedID : 26759170,PubMedID : 24597475")@expressed protein -
2 Sobic.001G319200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
3 Sobic.007G115500 plant protein of unknown function domain containing protein, expressed -
4 Sobic.006G021900 Multidrug resistence-associated protein 4(PubMedID : 26320239)@ABC transporter family protein, putative, expressed K05665: ATP-binding cassette, subfamily C (CFTR/MRP), member 1
5 Sobic.003G360200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@homeobox domain containing protein, expressed -
6 Sobic.006G009000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
7 Sobic.002G024000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lectin-like receptor kinase, putative, expressed -
8 Sobic.006G031200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DSBA-like thioredoxin domain containing protein, expressed -
9 Sobic.005G161100 expressed protein -
10 Sobic.004G195000 heavy metal transport/detoxification protein, putative, expressed -
11 Sobic.001G040400 EF hand family protein, putative, expressed -
12 Sobic.004G349300 tyrosine protein kinase domain containing protein, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
13 Sobic.005G093400 expressed protein -
14 Sobic.007G157900 gibberellin receptor GID1L2, putative, expressed -
15 Sobic.009G034800 WRKY5, expressed -
16 Sobic.003G199600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.004G167300 OsFBX51 - F-box domain containing protein, expressed -
18 Sobic.009G173900 expressed protein -
19 Sobic.001G075000 lectin-like receptor kinase, putative, expressed -
20 Sobic.001G125900 lipoxygenase, putative, expressed K15718: linoleate 9S-lipoxygenase


Gene co-expression network
sample Sobic002G067300 Sobic002G067300 Sobic006G113000 Sobic006G113000 Sobic002G067300--Sobic006G113000 Sobic001G319200 Sobic001G319200 Sobic002G067300--Sobic001G319200 Sobic007G115500 Sobic007G115500 Sobic002G067300--Sobic007G115500 Sobic006G021900 Sobic006G021900 Sobic002G067300--Sobic006G021900 Sobic003G360200 Sobic003G360200 Sobic002G067300--Sobic003G360200 Sobic006G009000 Sobic006G009000 Sobic002G067300--Sobic006G009000 Sobic002G024000 Sobic002G024000 Sobic002G067300--Sobic002G024000 Sobic006G031200 Sobic006G031200 Sobic002G067300--Sobic006G031200 Sobic005G161100 Sobic005G161100 Sobic002G067300--Sobic005G161100 Sobic010G192900 Sobic010G192900 Sobic006G113000--Sobic010G192900 Sobic006G113000--Sobic006G009000 Sobic005G080200 Sobic005G080200 Sobic006G113000--Sobic005G080200 Sobic001G195100 Sobic001G195100 Sobic006G113000--Sobic001G195100 Sobic004G114400 Sobic004G114400 Sobic006G113000--Sobic004G114400 Sobic006G246100 Sobic006G246100 Sobic006G113000--Sobic006G246100 Sobic010G099000 Sobic010G099000 Sobic006G113000--Sobic010G099000 Sobic006G113000--Sobic001G319200 Sobic006G113000--Sobic002G067300 Sobic004G195000 Sobic004G195000 Sobic001G319200--Sobic004G195000 Sobic001G319200--Sobic005G080200 Sobic001G319200--Sobic006G246100 Sobic001G319200--Sobic006G113000 Sobic001G319200--Sobic002G067300 Sobic001G432700 Sobic001G432700 Sobic001G319200--Sobic001G432700 Sobic010G194300 Sobic010G194300 Sobic001G319200--Sobic010G194300 Sobic001G319200--Sobic010G192900 Sobic001G319200--Sobic003G360200 Sobic003G228200 Sobic003G228200 Sobic007G115500--Sobic003G228200 Sobic002G327300 Sobic002G327300 Sobic007G115500--Sobic002G327300 Sobic001G318200 Sobic001G318200 Sobic007G115500--Sobic001G318200 Sobic007G127100 Sobic007G127100 Sobic007G115500--Sobic007G127100 Sobic007G115500--Sobic002G024000 Sobic009G065300 Sobic009G065300 Sobic007G115500--Sobic009G065300 Sobic007G115500--Sobic003G360200 Sobic003G192100 Sobic003G192100 Sobic007G115500--Sobic003G192100 Sobic007G115500--Sobic005G080200 Sobic005G093400 Sobic005G093400 Sobic006G021900--Sobic005G093400 Sobic005G021950 Sobic005G021950 Sobic006G021900--Sobic005G021950 Sobic001G261600 Sobic001G261600 Sobic006G021900--Sobic001G261600 Sobic006G021900--Sobic002G067300 Sobic001G410450 Sobic001G410450 Sobic006G021900--Sobic001G410450 Sobic007G129201 Sobic007G129201 Sobic006G021900--Sobic007G129201 Sobic009G181300 Sobic009G181300 Sobic006G021900--Sobic009G181300 Sobic008G074500 Sobic008G074500 Sobic006G021900--Sobic008G074500 Sobic009G252100 Sobic009G252100 Sobic006G021900--Sobic009G252100 Sobic003G360200--Sobic007G127100 Sobic003G360200--Sobic006G009000 Sobic003G360200--Sobic009G065300 Sobic003G416300 Sobic003G416300 Sobic003G360200--Sobic003G416300 Sobic003G360200--Sobic001G432700 Sobic003G360200--Sobic006G246100 Sobic003G360200--Sobic002G327300 Sobic003G360200--Sobic007G115500 Sobic003G135700 Sobic003G135700 Sobic003G360200--Sobic003G135700 Sobic006G009100 Sobic006G009100 Sobic006G009000--Sobic006G009100 Sobic006G009000--Sobic010G192900 Sobic002G327100 Sobic002G327100 Sobic006G009000--Sobic002G327100 Sobic006G009000--Sobic009G065300 Sobic006G255400 Sobic006G255400 Sobic006G009000--Sobic006G255400 Sobic006G009000--Sobic007G127100 Sobic006G050800 Sobic006G050800 Sobic006G009000--Sobic006G050800 Sobic006G068800 Sobic006G068800 Sobic006G009000--Sobic006G068800 Sobic006G009000--Sobic003G360200 Sobic002G024000--Sobic010G192900 Sobic003G417100 Sobic003G417100 Sobic002G024000--Sobic003G417100 Sobic002G024000--Sobic006G068800 Sobic002G024000--Sobic007G115500 Sobic010G194100 Sobic010G194100 Sobic002G024000--Sobic010G194100 Sobic002G361200 Sobic002G361200 Sobic002G024000--Sobic002G361200 Sobic002G024000--Sobic006G009000 Sobic009G171600 Sobic009G171600 Sobic002G024000--Sobic009G171600 Sobic002G024000--Sobic003G228200 Sobic008G109200 Sobic008G109200 Sobic006G031200--Sobic008G109200 Sobic006G031200--Sobic002G067300 Sobic006G031200--Sobic006G021900 Sobic006G031200--Sobic005G093400 Sobic003G428900 Sobic003G428900 Sobic006G031200--Sobic003G428900 Sobic001G331000 Sobic001G331000 Sobic006G031200--Sobic001G331000 Sobic006G228200 Sobic006G228200 Sobic006G031200--Sobic006G228200 Sobic006G014000 Sobic006G014000 Sobic006G031200--Sobic006G014000 Sobic004G349300 Sobic004G349300 Sobic006G031200--Sobic004G349300 Sobic001G093900 Sobic001G093900 Sobic005G161100--Sobic001G093900 Sobic001G024500 Sobic001G024500 Sobic005G161100--Sobic001G024500 Sobic009G025900 Sobic009G025900 Sobic005G161100--Sobic009G025900 Sobic008G113000 Sobic008G113000 Sobic005G161100--Sobic008G113000 Sobic001G182600 Sobic001G182600 Sobic005G161100--Sobic001G182600 Sobic005G161100--Sobic006G246100 Sobic004G010300 Sobic004G010300 Sobic005G161100--Sobic004G010300 Sobic005G161100--Sobic009G065300 Sobic001G403300 Sobic001G403300 Sobic005G161100--Sobic001G403300
Octagon: transcription factors


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