Gene annotation
Transcriptome id Sobic.006G113000.1
Synonym Sb06g019470
Functional annotation Copper transport protein family( (PubMedID : 26759170,(PubMedID : 24597475)
expressed protein
UniProt C5YA94
Pfam -
Panther DB PTHR22814 PTHR22814:SF149
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G20180 : Copper transport protein family
RAP-DB (Rice) LOC_Os04g39320.4 : expressed protein
MaizeGDB (Corn) Zm00025a011066
Brachypodium -
Barley HORVU2Hr1G081540.3 , HORVU2Hr1G081540.1
Wheat TraesCS2B02G348800 , TraesCS2A02G333000 , TraesCS2D02G329900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G192900 expressed protein -
2 Sobic.006G009000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
3 Sobic.005G080200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Ser/Thr protein phosphatase family protein, putative, expressed -
4 Sobic.001G195100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
5 Sobic.004G114400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
6 Sobic.006G246100 one cut domain family member 3, putative, expressed -
7 Sobic.010G099000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@spotted leaf 11, putative, expressed -
8 Sobic.001G319200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
9 Sobic.002G067300 ATPase, putative, expressed -
10 Sobic.004G233400 - -
11 Sobic.006G068800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family protein, putative, expressed -
12 Sobic.009G173900 expressed protein -
13 Sobic.003G110200 NADP-dependent oxidoreductase, putative, expressed K07119: PTGR3, prostaglandin reductase 3
14 Sobic.003G360200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@homeobox domain containing protein, expressed -
15 Sobic.004G311300 expressed protein -
16 Sobic.003G037500 WRKY107, expressed -
17 Sobic.004G167300 OsFBX51 - F-box domain containing protein, expressed -
18 Sobic.001G432700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.003G296300 WRKY13, expressed -
20 Sobic.002G092801 - -


Gene co-expression network
sample Sobic006G113000 Sobic006G113000 Sobic010G192900 Sobic010G192900 Sobic006G113000--Sobic010G192900 Sobic006G009000 Sobic006G009000 Sobic006G113000--Sobic006G009000 Sobic005G080200 Sobic005G080200 Sobic006G113000--Sobic005G080200 Sobic001G195100 Sobic001G195100 Sobic006G113000--Sobic001G195100 Sobic004G114400 Sobic004G114400 Sobic006G113000--Sobic004G114400 Sobic006G246100 Sobic006G246100 Sobic006G113000--Sobic006G246100 Sobic010G099000 Sobic010G099000 Sobic006G113000--Sobic010G099000 Sobic001G319200 Sobic001G319200 Sobic006G113000--Sobic001G319200 Sobic002G067300 Sobic002G067300 Sobic006G113000--Sobic002G067300 Sobic006G068800 Sobic006G068800 Sobic010G192900--Sobic006G068800 Sobic002G327100 Sobic002G327100 Sobic010G192900--Sobic002G327100 Sobic003G037500 Sobic003G037500 Sobic010G192900--Sobic003G037500 Sobic004G297900 Sobic004G297900 Sobic010G192900--Sobic004G297900 Sobic010G192900--Sobic006G009000 Sobic006G009100 Sobic006G009100 Sobic010G192900--Sobic006G009100 Sobic003G228200 Sobic003G228200 Sobic010G192900--Sobic003G228200 Sobic006G255400 Sobic006G255400 Sobic010G192900--Sobic006G255400 Sobic003G311800 Sobic003G311800 Sobic010G192900--Sobic003G311800 Sobic006G009000--Sobic006G009100 Sobic006G009000--Sobic010G192900 Sobic006G009000--Sobic002G327100 Sobic009G065300 Sobic009G065300 Sobic006G009000--Sobic009G065300 Sobic006G009000--Sobic006G255400 Sobic007G127100 Sobic007G127100 Sobic006G009000--Sobic007G127100 Sobic006G050800 Sobic006G050800 Sobic006G009000--Sobic006G050800 Sobic006G009000--Sobic006G068800 Sobic003G360200 Sobic003G360200 Sobic006G009000--Sobic003G360200 Sobic005G080200--Sobic006G246100 Sobic001G432700 Sobic001G432700 Sobic005G080200--Sobic001G432700 Sobic001G192600 Sobic001G192600 Sobic005G080200--Sobic001G192600 Sobic005G080200--Sobic001G195100 Sobic010G194300 Sobic010G194300 Sobic005G080200--Sobic010G194300 Sobic005G080200--Sobic003G037500 Sobic003G417350 Sobic003G417350 Sobic005G080200--Sobic003G417350 Sobic010G075600 Sobic010G075600 Sobic005G080200--Sobic010G075600 Sobic005G080200--Sobic001G319200 Sobic001G314800 Sobic001G314800 Sobic001G195100--Sobic001G314800 Sobic003G102200 Sobic003G102200 Sobic001G195100--Sobic003G102200 Sobic004G297100 Sobic004G297100 Sobic001G195100--Sobic004G297100 Sobic001G059400 Sobic001G059400 Sobic001G195100--Sobic001G059400 Sobic007G118301 Sobic007G118301 Sobic001G195100--Sobic007G118301 Sobic007G090300 Sobic007G090300 Sobic001G195100--Sobic007G090300 Sobic005G109000 Sobic005G109000 Sobic001G195100--Sobic005G109000 Sobic001G088300 Sobic001G088300 Sobic001G195100--Sobic001G088300 Sobic003G296300 Sobic003G296300 Sobic001G195100--Sobic003G296300 Sobic004G114400--Sobic006G246100 Sobic008G181300 Sobic008G181300 Sobic004G114400--Sobic008G181300 Sobic004G114400--Sobic006G113000 Sobic004G114400--Sobic003G296300 Sobic009G192100 Sobic009G192100 Sobic004G114400--Sobic009G192100 Sobic001G061101 Sobic001G061101 Sobic004G114400--Sobic001G061101 Sobic004G114400--Sobic001G195100 Sobic005G000100 Sobic005G000100 Sobic004G114400--Sobic005G000100 Sobic004G195000 Sobic004G195000 Sobic004G114400--Sobic004G195000 Sobic006G246100--Sobic003G296300 Sobic006G246100--Sobic005G080200 Sobic006G246100--Sobic010G194300 Sobic002G319100 Sobic002G319100 Sobic006G246100--Sobic002G319100 Sobic001G345400 Sobic001G345400 Sobic006G246100--Sobic001G345400 Sobic006G246100--Sobic004G114400 Sobic004G010300 Sobic004G010300 Sobic006G246100--Sobic004G010300 Sobic010G194900 Sobic010G194900 Sobic006G246100--Sobic010G194900 Sobic006G246100--Sobic004G195000 Sobic009G067400 Sobic009G067400 Sobic010G099000--Sobic009G067400 Sobic008G018600 Sobic008G018600 Sobic010G099000--Sobic008G018600 Sobic002G407200 Sobic002G407200 Sobic010G099000--Sobic002G407200 Sobic009G216050 Sobic009G216050 Sobic010G099000--Sobic009G216050 Sobic010G099000--Sobic001G314800 Sobic010G099000--Sobic006G113000 Sobic010G099000--Sobic001G195100 Sobic003G310500 Sobic003G310500 Sobic010G099000--Sobic003G310500 Sobic010G099000--Sobic008G181300 Sobic001G319200--Sobic004G195000 Sobic001G319200--Sobic005G080200 Sobic001G319200--Sobic006G246100 Sobic001G319200--Sobic006G113000 Sobic001G319200--Sobic002G067300 Sobic001G319200--Sobic001G432700 Sobic001G319200--Sobic010G194300 Sobic001G319200--Sobic010G192900 Sobic001G319200--Sobic003G360200 Sobic002G067300--Sobic006G113000 Sobic002G067300--Sobic001G319200 Sobic007G115500 Sobic007G115500 Sobic002G067300--Sobic007G115500 Sobic006G021900 Sobic006G021900 Sobic002G067300--Sobic006G021900 Sobic002G067300--Sobic003G360200 Sobic002G067300--Sobic006G009000 Sobic002G024000 Sobic002G024000 Sobic002G067300--Sobic002G024000 Sobic006G031200 Sobic006G031200 Sobic002G067300--Sobic006G031200 Sobic005G161100 Sobic005G161100 Sobic002G067300--Sobic005G161100
Octagon: transcription factors


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