Gene annotation
Transcriptome id Sobic.006G123000.1
Synonym Sb06g020340
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1B6PLN0
Pfam PF00400
Panther DB PTHR22844 PTHR22844:SF199
NCBI CDD KOG0313; Microtubule binding protein YTM1 (contains WD40 repeats)
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G24530 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os04g40560.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a010972 , Zm00025a056313
Brachypodium KQJ83184
Barley HORVU2Hr1G083090.1
Wheat -
Populus -


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cDNA sequences
Sobic.006G123000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G187000 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
2 Sobic.006G278600 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed K10767: mRNA N6-methyladenine demethylase
3 Sobic.007G206700 lectin-like protein kinase, putative, expressed -
4 Sobic.005G098200 TKL_IRAK_CR4L.7 - The CR4L subfamily has homology with Crinkly4, expressed -
5 Sobic.002G001300 laccase precursor protein, putative, expressed K05909: laccase
6 Sobic.001G494150 - -
7 Sobic.003G083700 DNA binding protein, putative, expressed -
8 Sobic.007G076800 B3 DNA binding domain containing protein, expressed -
9 Sobic.008G136900 expressed protein -
10 Sobic.010G259200 harpin-induced protein 1 domain containing protein, expressed -
11 Sobic.004G295400 amino acid kinase, putative, expressed K00930: acetylglutamate kinase
12 Sobic.010G087200 expressed protein -
13 Sobic.004G128800 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed -
14 Sobic.004G089700 - -
15 Sobic.001G523500 DUF623 domain containing protein, expressed -
16 Sobic.010G002850 - -
17 Sobic.009G236500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.001G104400 expressed protein -
19 Sobic.001G457100 - -
20 Sobic.003G104900 methyltransferase, putative, expressed K08241: jasmonate O-methyltransferase


Gene co-expression network
sample Sobic006G123000 Sobic006G123000 Sobic009G187000 Sobic009G187000 Sobic006G123000--Sobic009G187000 Sobic006G278600 Sobic006G278600 Sobic006G123000--Sobic006G278600 Sobic007G206700 Sobic007G206700 Sobic006G123000--Sobic007G206700 Sobic005G098200 Sobic005G098200 Sobic006G123000--Sobic005G098200 Sobic002G001300 Sobic002G001300 Sobic006G123000--Sobic002G001300 Sobic001G494150 Sobic001G494150 Sobic006G123000--Sobic001G494150 Sobic003G083700 Sobic003G083700 Sobic006G123000--Sobic003G083700 Sobic007G076800 Sobic007G076800 Sobic006G123000--Sobic007G076800 Sobic008G136900 Sobic008G136900 Sobic006G123000--Sobic008G136900 Sobic009G187000--Sobic007G206700 Sobic010G259200 Sobic010G259200 Sobic009G187000--Sobic010G259200 Sobic009G187000--Sobic002G001300 Sobic010G119600 Sobic010G119600 Sobic009G187000--Sobic010G119600 Sobic009G187000--Sobic003G083700 Sobic010G087200 Sobic010G087200 Sobic009G187000--Sobic010G087200 Sobic004G128800 Sobic004G128800 Sobic009G187000--Sobic004G128800 Sobic009G187000--Sobic008G136900 Sobic010G002850 Sobic010G002850 Sobic009G187000--Sobic010G002850 Sobic007G206550 Sobic007G206550 Sobic006G278600--Sobic007G206550 Sobic002G003100 Sobic002G003100 Sobic006G278600--Sobic002G003100 Sobic004G089700 Sobic004G089700 Sobic006G278600--Sobic004G089700 Sobic007G157550 Sobic007G157550 Sobic006G278600--Sobic007G157550 Sobic004G347866 Sobic004G347866 Sobic006G278600--Sobic004G347866 Sobic005G209800 Sobic005G209800 Sobic006G278600--Sobic005G209800 Sobic002G048250 Sobic002G048250 Sobic006G278600--Sobic002G048250 Sobic001G457100 Sobic001G457100 Sobic006G278600--Sobic001G457100 Sobic005G231800 Sobic005G231800 Sobic006G278600--Sobic005G231800 Sobic007G206700--Sobic010G259200 Sobic007G206700--Sobic002G001300 Sobic007G206700--Sobic003G083700 Sobic007G206700--Sobic010G119600 Sobic001G402701 Sobic001G402701 Sobic007G206700--Sobic001G402701 Sobic003G390300 Sobic003G390300 Sobic007G206700--Sobic003G390300 Sobic003G104900 Sobic003G104900 Sobic007G206700--Sobic003G104900 Sobic007G206700--Sobic010G087200 Sobic001G062700 Sobic001G062700 Sobic007G206700--Sobic001G062700 Sobic005G098200--Sobic003G104900 Sobic001G483700 Sobic001G483700 Sobic005G098200--Sobic001G483700 Sobic005G098200--Sobic005G209800 Sobic005G098200--Sobic005G231800 Sobic008G002100 Sobic008G002100 Sobic005G098200--Sobic008G002100 Sobic003G142900 Sobic003G142900 Sobic005G098200--Sobic003G142900 Sobic008G023000 Sobic008G023000 Sobic005G098200--Sobic008G023000 Sobic004G226300 Sobic004G226300 Sobic005G098200--Sobic004G226300 Sobic001G527400 Sobic001G527400 Sobic005G098200--Sobic001G527400 Sobic002G001300--Sobic010G259200 Sobic002G001300--Sobic007G206700 Sobic002G001300--Sobic003G083700 Sobic002G001300--Sobic010G087200 Sobic002G001300--Sobic010G119600 Sobic002G001300--Sobic001G402701 Sobic002G001300--Sobic001G494150 Sobic002G001300--Sobic003G104900 Sobic006G166700 Sobic006G166700 Sobic002G001300--Sobic006G166700 Sobic006G075700 Sobic006G075700 Sobic001G494150--Sobic006G075700 Sobic001G494150--Sobic010G259200 Sobic001G494150--Sobic010G119600 Sobic009G236500 Sobic009G236500 Sobic001G494150--Sobic009G236500 Sobic001G494150--Sobic002G001300 Sobic002G366700 Sobic002G366700 Sobic001G494150--Sobic002G366700 Sobic001G494150--Sobic010G002850 Sobic001G494150--Sobic010G087200 Sobic005G156700 Sobic005G156700 Sobic001G494150--Sobic005G156700 Sobic003G083700--Sobic003G104900 Sobic003G083700--Sobic010G259200 Sobic003G083700--Sobic007G206700 Sobic003G083700--Sobic002G001300 Sobic003G083700--Sobic001G483700 Sobic003G083700--Sobic010G002850 Sobic003G083700--Sobic005G209800 Sobic003G083700--Sobic003G390300 Sobic003G083700--Sobic001G402701 Sobic007G076800--Sobic003G390300 Sobic004G061600 Sobic004G061600 Sobic007G076800--Sobic004G061600 Sobic004G107400 Sobic004G107400 Sobic007G076800--Sobic004G107400 Sobic007G076800--Sobic008G136900 Sobic009G005800 Sobic009G005800 Sobic007G076800--Sobic009G005800 Sobic007G076800--Sobic001G062700 Sobic002G010500 Sobic002G010500 Sobic007G076800--Sobic002G010500 Sobic007G076800--Sobic010G119600 Sobic007G076800--Sobic007G206700 Sobic008G136900--Sobic003G390300 Sobic008G136900--Sobic004G061600 Sobic008G136900--Sobic004G107400 Sobic001G103400 Sobic001G103400 Sobic008G136900--Sobic001G103400 Sobic007G158400 Sobic007G158400 Sobic008G136900--Sobic007G158400 Sobic008G136900--Sobic001G483700 Sobic010G014900 Sobic010G014900 Sobic008G136900--Sobic010G014900 Sobic008G136900--Sobic003G104900 Sobic009G028600 Sobic009G028600 Sobic008G136900--Sobic009G028600
Octagon: transcription factors


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