Gene annotation
Transcriptome id Sobic.006G161800.1
Synonym Sb06g023860
Functional annotation integral membrane protein, putative, expressed
UniProt C5YCZ5
Pfam PF01988
Panther DB PTHR31851 PTHR31851:SF7
NCBI CDD KOG4473; Uncharacterized membrane protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G43660 : Vacuolar iron transporter (VIT) family protein
RAP-DB (Rice) LOC_Os04g45520.1 : integral membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a056609 , Zm00025a010412
Brachypodium KQK00532
Barley HORVU6Hr1G061000.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G111100 GDSL-like lipase/acylhydrolase, putative, expressed -
2 Sobic.002G328600 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
3 Sobic.003G227700 cytochrome P450 72A1, putative, expressed -
4 Sobic.005G127200 GDSL-like lipase/acylhydrolase, putative, expressed -
5 Sobic.004G266700 hydrolase, alpha/beta fold family domain containing protein, expressed -
6 Sobic.009G162300 similar to Putative laccase-11(PubMedID : 29862293)@Laccase LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
7 Sobic.001G068500 lysine-rich arabinogalactan protein 19 precursor, putative, expressed -
8 Sobic.010G093300 GDSL-like lipase/acylhydrolase, putative, expressed -
9 Sobic.001G413700 white-brown complex homolog protein, putative, expressed -
10 Sobic.009G008800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@xylem cysteine proteinase 2 precursor, putative, expressed K16290: xylem cysteine proteinase
11 Sobic.007G047300 encodes the lignin biosynthetic enzyme caffeic acid O-methyltransferase (COMT)(PubMedID : 20585750)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylate the tricin precursors luteolin and selgin(PubMedID : 28594846)@monolignol biosynthetic enzyme caffeic acid O-methyl transferase (COMT)(PubMedID : 12756532)@lignin biosynthesis(PubMedID : 12756532)@key enzymes in the phenylptropanoid pathway(PubMedID : 28119720)@O-methyltransferase, putative, expressed K05279: flavonol 3-O-methyltransferase
12 Sobic.010G070300 DNA binding protein, putative, expressed -
13 Sobic.003G368100 transferase family protein, putative, expressed K15400: omega-hydroxypalmitate O-feruloyl transferase
14 Sobic.002G030650 - -
15 Sobic.002G050300 LTPL100 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
16 Sobic.002G030575 - -
17 Sobic.002G003500 peroxidase precursor, putative, expressed K00430: peroxidase
18 Sobic.010G192432 - K14431: transcription factor TGA
19 Sobic.001G169400 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
20 Sobic.001G014700 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -


Gene co-expression network
sample Sobic006G161800 Sobic006G161800 Sobic004G111100 Sobic004G111100 Sobic006G161800--Sobic004G111100 Sobic002G328600 Sobic002G328600 Sobic006G161800--Sobic002G328600 Sobic003G227700 Sobic003G227700 Sobic006G161800--Sobic003G227700 Sobic005G127200 Sobic005G127200 Sobic006G161800--Sobic005G127200 Sobic004G266700 Sobic004G266700 Sobic006G161800--Sobic004G266700 Sobic009G162300 Sobic009G162300 Sobic006G161800--Sobic009G162300 Sobic001G068500 Sobic001G068500 Sobic006G161800--Sobic001G068500 Sobic010G093300 Sobic010G093300 Sobic006G161800--Sobic010G093300 Sobic001G413700 Sobic001G413700 Sobic006G161800--Sobic001G413700 Sobic010G101900 Sobic010G101900 Sobic004G111100--Sobic010G101900 Sobic007G047300 Sobic007G047300 Sobic004G111100--Sobic007G047300 Sobic003G254700 Sobic003G254700 Sobic004G111100--Sobic003G254700 Sobic004G111100--Sobic009G162300 Sobic004G111100--Sobic003G227700 Sobic001G360700 Sobic001G360700 Sobic004G111100--Sobic001G360700 Sobic002G207200 Sobic002G207200 Sobic004G111100--Sobic002G207200 Sobic001G072600 Sobic001G072600 Sobic004G111100--Sobic001G072600 Sobic009G034300 Sobic009G034300 Sobic004G111100--Sobic009G034300 Sobic002G328600--Sobic003G227700 Sobic005G092000 Sobic005G092000 Sobic002G328600--Sobic005G092000 Sobic006G191100 Sobic006G191100 Sobic002G328600--Sobic006G191100 Sobic010G069900 Sobic010G069900 Sobic002G328600--Sobic010G069900 Sobic002G328600--Sobic006G161800 Sobic008G013800 Sobic008G013800 Sobic002G328600--Sobic008G013800 Sobic003G083200 Sobic003G083200 Sobic002G328600--Sobic003G083200 Sobic008G037900 Sobic008G037900 Sobic002G328600--Sobic008G037900 Sobic010G192366 Sobic010G192366 Sobic002G328600--Sobic010G192366 Sobic003G227700--Sobic010G069900 Sobic003G257400 Sobic003G257400 Sobic003G227700--Sobic003G257400 Sobic010G071400 Sobic010G071400 Sobic003G227700--Sobic010G071400 Sobic006G003100 Sobic006G003100 Sobic003G227700--Sobic006G003100 Sobic001G006201 Sobic001G006201 Sobic003G227700--Sobic001G006201 Sobic007G158800 Sobic007G158800 Sobic003G227700--Sobic007G158800 Sobic003G000100 Sobic003G000100 Sobic003G227700--Sobic003G000100 Sobic010G152400 Sobic010G152400 Sobic003G227700--Sobic010G152400 Sobic004G106100 Sobic004G106100 Sobic003G227700--Sobic004G106100 Sobic005G127200--Sobic010G093300 Sobic005G127200--Sobic004G266700 Sobic005G127200--Sobic001G068500 Sobic002G030800 Sobic002G030800 Sobic005G127200--Sobic002G030800 Sobic003G341500 Sobic003G341500 Sobic005G127200--Sobic003G341500 Sobic001G059600 Sobic001G059600 Sobic005G127200--Sobic001G059600 Sobic002G030650 Sobic002G030650 Sobic005G127200--Sobic002G030650 Sobic005G127200--Sobic001G413700 Sobic003G368100 Sobic003G368100 Sobic005G127200--Sobic003G368100 Sobic004G266700--Sobic005G127200 Sobic004G266700--Sobic003G341500 Sobic001G144800 Sobic001G144800 Sobic004G266700--Sobic001G144800 Sobic004G266700--Sobic001G068500 Sobic004G266700--Sobic010G093300 Sobic009G008800 Sobic009G008800 Sobic004G266700--Sobic009G008800 Sobic004G266700--Sobic003G368100 Sobic003G239100 Sobic003G239100 Sobic004G266700--Sobic003G239100 Sobic004G266700--Sobic001G059600 Sobic003G353200 Sobic003G353200 Sobic009G162300--Sobic003G353200 Sobic002G146000 Sobic002G146000 Sobic009G162300--Sobic002G146000 Sobic003G053600 Sobic003G053600 Sobic009G162300--Sobic003G053600 Sobic003G183300 Sobic003G183300 Sobic009G162300--Sobic003G183300 Sobic005G166700 Sobic005G166700 Sobic009G162300--Sobic005G166700 Sobic003G280000 Sobic003G280000 Sobic009G162300--Sobic003G280000 Sobic009G162300--Sobic006G003100 Sobic009G162300--Sobic003G257400 Sobic004G047600 Sobic004G047600 Sobic009G162300--Sobic004G047600 Sobic001G068500--Sobic003G368100 Sobic001G068500--Sobic003G341500 Sobic002G050300 Sobic002G050300 Sobic001G068500--Sobic002G050300 Sobic001G068500--Sobic005G127200 Sobic001G068500--Sobic010G093300 Sobic001G068500--Sobic004G266700 Sobic001G059500 Sobic001G059500 Sobic001G068500--Sobic001G059500 Sobic001G068500--Sobic001G059600 Sobic001G068500--Sobic001G144800 Sobic010G093300--Sobic005G127200 Sobic010G093300--Sobic001G068500 Sobic010G093300--Sobic001G059600 Sobic010G093300--Sobic002G050300 Sobic010G093300--Sobic001G413700 Sobic006G224500 Sobic006G224500 Sobic010G093300--Sobic006G224500 Sobic010G093300--Sobic004G266700 Sobic010G093300--Sobic003G368100 Sobic009G006300 Sobic009G006300 Sobic010G093300--Sobic009G006300 Sobic001G413700--Sobic010G093300 Sobic001G413700--Sobic005G127200 Sobic002G409000 Sobic002G409000 Sobic001G413700--Sobic002G409000 Sobic001G413700--Sobic002G030800 Sobic001G413700--Sobic006G224500 Sobic001G413700--Sobic001G068500 Sobic001G471800 Sobic001G471800 Sobic001G413700--Sobic001G471800 Sobic001G413700--Sobic001G059600 Sobic001G413700--Sobic009G006300
Octagon: transcription factors


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