Gene annotation
Transcriptome id Sobic.006G217100.1
Synonym Sb06g028700
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
Cupin domain containing protein, expressed
UniProt C5YG34
Pfam PF07883
Panther DB PTHR31238 PTHR31238:SF16
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G05950 : RmlC-like cupins superfamily protein
RAP-DB (Rice) LOC_Os04g52720.1 : Cupin domain containing protein, expressed
MaizeGDB (Corn) Zm00025a009755 , Zm00025a012376 , Zm00025a055675
Brachypodium KQJ84624
Barley HORVU2Hr1G104240.1 , HORVU2Hr1G104240.2 , HORVU2Hr1G104220.2 , HORVU2Hr1G104220.1
Wheat TraesCS2B02G481600 , TraesCS2A02G459900 , TraesCS2A02G459800 , TraesCS2D02G460200 , TraesCS2B02G481500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G242000 CSLF7 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed -
2 Sobic.002G063800 transferase family protein, putative, expressed -
3 Sobic.002G351300 expressed protein -
4 Sobic.001G330300 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
5 Sobic.004G064500 class I glutamine amidotransferase, putative, expressed -
6 Sobic.006G050800 expressed protein -
7 Sobic.004G141100 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
8 Sobic.003G269000 STE_MEKK_ste11_MAP3K.7 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
9 Sobic.002G243000 aspartic proteinase nepenthesin-2 precursor, putative, expressed -
10 Sobic.002G189100 beta-glucan-binding protein 4, putative, expressed K01180: endo-1,3(4)-beta-glucanase
11 Sobic.004G315200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
12 Sobic.007G058400 Superior methylation activity against resveratrol compared with that of sbOMT3(PubMedID : 25033820)@O-methyltransferase, putative, expressed -
13 Sobic.010G082600 EF hand family protein, putative, expressed -
14 Sobic.010G081100 lipase, putative, expressed -
15 Sobic.006G235000 expressed protein -
16 Sobic.003G073380 - -
17 Sobic.003G414800 DUF567 domain containing protein, putative, expressed -
18 Sobic.004G245700 expressed protein -
19 Sobic.008G009400 - -
20 Sobic.009G192600 Protein tyrosine/DOPA decarboxylase 1 (Os)(PubMedID : 27208977)@decarboxylase, putative, expressed K01592: tyrosine decarboxylase


Gene co-expression network
sample Sobic006G217100 Sobic006G217100 Sobic001G242000 Sobic001G242000 Sobic006G217100--Sobic001G242000 Sobic002G063800 Sobic002G063800 Sobic006G217100--Sobic002G063800 Sobic002G351300 Sobic002G351300 Sobic006G217100--Sobic002G351300 Sobic001G330300 Sobic001G330300 Sobic006G217100--Sobic001G330300 Sobic004G064500 Sobic004G064500 Sobic006G217100--Sobic004G064500 Sobic006G050800 Sobic006G050800 Sobic006G217100--Sobic006G050800 Sobic004G141100 Sobic004G141100 Sobic006G217100--Sobic004G141100 Sobic003G269000 Sobic003G269000 Sobic006G217100--Sobic003G269000 Sobic002G243000 Sobic002G243000 Sobic006G217100--Sobic002G243000 Sobic007G054900 Sobic007G054900 Sobic001G242000--Sobic007G054900 Sobic002G369400 Sobic002G369400 Sobic001G242000--Sobic002G369400 Sobic001G242000--Sobic002G063800 Sobic001G242000--Sobic001G330300 Sobic010G270700 Sobic010G270700 Sobic001G242000--Sobic010G270700 Sobic010G062300 Sobic010G062300 Sobic001G242000--Sobic010G062300 Sobic001G242000--Sobic006G050800 Sobic010G009900 Sobic010G009900 Sobic001G242000--Sobic010G009900 Sobic001G449100 Sobic001G449100 Sobic001G242000--Sobic001G449100 Sobic003G079200 Sobic003G079200 Sobic002G063800--Sobic003G079200 Sobic006G235000 Sobic006G235000 Sobic002G063800--Sobic006G235000 Sobic002G063800--Sobic010G062300 Sobic006G008000 Sobic006G008000 Sobic002G063800--Sobic006G008000 Sobic002G012300 Sobic002G012300 Sobic002G063800--Sobic002G012300 Sobic008G158600 Sobic008G158600 Sobic002G063800--Sobic008G158600 Sobic009G145600 Sobic009G145600 Sobic002G063800--Sobic009G145600 Sobic005G086600 Sobic005G086600 Sobic002G063800--Sobic005G086600 Sobic002G012500 Sobic002G012500 Sobic002G063800--Sobic002G012500 Sobic002G351300--Sobic004G141100 Sobic008G009400 Sobic008G009400 Sobic002G351300--Sobic008G009400 Sobic007G017500 Sobic007G017500 Sobic002G351300--Sobic007G017500 Sobic006G075400 Sobic006G075400 Sobic002G351300--Sobic006G075400 Sobic003G299300 Sobic003G299300 Sobic002G351300--Sobic003G299300 Sobic009G205500 Sobic009G205500 Sobic002G351300--Sobic009G205500 Sobic006G235100 Sobic006G235100 Sobic002G351300--Sobic006G235100 Sobic004G041900 Sobic004G041900 Sobic002G351300--Sobic004G041900 Sobic004G294400 Sobic004G294400 Sobic002G351300--Sobic004G294400 Sobic001G330300--Sobic003G299300 Sobic004G295100 Sobic004G295100 Sobic001G330300--Sobic004G295100 Sobic001G330300--Sobic008G009400 Sobic001G330300--Sobic006G050800 Sobic001G330300--Sobic010G270700 Sobic001G330300--Sobic004G141100 Sobic010G196000 Sobic010G196000 Sobic001G330300--Sobic010G196000 Sobic001G330300--Sobic001G242000 Sobic003G282100 Sobic003G282100 Sobic001G330300--Sobic003G282100 Sobic009G192600 Sobic009G192600 Sobic004G064500--Sobic009G192600 Sobic001G259400 Sobic001G259400 Sobic004G064500--Sobic001G259400 Sobic007G122800 Sobic007G122800 Sobic004G064500--Sobic007G122800 Sobic004G064500--Sobic005G086600 Sobic003G268600 Sobic003G268600 Sobic004G064500--Sobic003G268600 Sobic002G189100 Sobic002G189100 Sobic004G064500--Sobic002G189100 Sobic004G064500--Sobic003G269000 Sobic001G267600 Sobic001G267600 Sobic004G064500--Sobic001G267600 Sobic006G007900 Sobic006G007900 Sobic004G064500--Sobic006G007900 Sobic004G180700 Sobic004G180700 Sobic006G050800--Sobic004G180700 Sobic006G050800--Sobic010G196000 Sobic006G050800--Sobic001G330300 Sobic006G202600 Sobic006G202600 Sobic006G050800--Sobic006G202600 Sobic006G050800--Sobic004G295100 Sobic004G301600 Sobic004G301600 Sobic006G050800--Sobic004G301600 Sobic002G301900 Sobic002G301900 Sobic006G050800--Sobic002G301900 Sobic003G136200 Sobic003G136200 Sobic006G050800--Sobic003G136200 Sobic006G050800--Sobic010G009900 Sobic004G141100--Sobic002G351300 Sobic004G141100--Sobic006G235100 Sobic010G082600 Sobic010G082600 Sobic004G141100--Sobic010G082600 Sobic004G141100--Sobic007G017500 Sobic004G141100--Sobic006G075400 Sobic004G141100--Sobic008G009400 Sobic006G054800 Sobic006G054800 Sobic004G141100--Sobic006G054800 Sobic004G141100--Sobic006G008000 Sobic008G066401 Sobic008G066401 Sobic004G141100--Sobic008G066401 Sobic003G073380 Sobic003G073380 Sobic003G269000--Sobic003G073380 Sobic003G269000--Sobic005G086600 Sobic003G269000--Sobic003G268600 Sobic009G186800 Sobic009G186800 Sobic003G269000--Sobic009G186800 Sobic003G269000--Sobic006G235000 Sobic001G330400 Sobic001G330400 Sobic003G269000--Sobic001G330400 Sobic003G269000--Sobic004G064500 Sobic004G315200 Sobic004G315200 Sobic003G269000--Sobic004G315200 Sobic003G269000--Sobic002G063800 Sobic006G240600 Sobic006G240600 Sobic002G243000--Sobic006G240600 Sobic003G050300 Sobic003G050300 Sobic002G243000--Sobic003G050300 Sobic009G145500 Sobic009G145500 Sobic002G243000--Sobic009G145500 Sobic008G027600 Sobic008G027600 Sobic002G243000--Sobic008G027600 Sobic004G161751 Sobic004G161751 Sobic002G243000--Sobic004G161751 Sobic002G243000--Sobic003G073380 Sobic002G243000--Sobic001G449100 Sobic002G243000--Sobic002G369400 Sobic001G401100 Sobic001G401100 Sobic002G243000--Sobic001G401100
Octagon: transcription factors


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