Gene annotation
Transcriptome id Sobic.008G029900.1
Synonym
Functional annotation expressed protein
UniProt C5YRJ8
Pfam PF10275
Panther DB PTHR12931 PTHR12931:SF18
NCBI CDD KOG3991; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G28120 : -
RAP-DB (Rice) LOC_Os04g55840.1 : expressed protein
MaizeGDB (Corn) Zm00025a053807 , Zm00025a053809
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G116766 - -
2 Sobic.009G234500 similar to Cold acclimation protein COR413-TM1(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@cold acclimation protein WCOR413, putative, expressed -
3 Sobic.008G152500 tetraacyldisaccharide 4-kinase, putative, expressed K00912: tetraacyldisaccharide 4'-kinase
4 Sobic.007G214800 expressed protein -
5 Sobic.006G192800 expressed protein -
6 Sobic.003G176375 - -
7 Sobic.010G273800 "starch biosynthesis, 1,4-alpha-glucan branching enzyme"(PubMedID : 21853065)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
8 Sobic.007G056900 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
9 Sobic.001G534400 - -
10 Sobic.010G164500 meiosis 5, putative, expressed -
11 Sobic.006G257600 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05609: UCHL3, ubiquitin carboxyl-terminal hydrolase L3
12 Sobic.009G014900 expressed protein -
13 Sobic.010G207900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@prenyltransferase, putative, expressed K09833: HPT, HGGT, homogentisate phytyltransferase / homogentisate geranylgeranyltransferase
14 Sobic.004G218000 SET domain containing protein, expressed -
15 Sobic.007G088700 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
16 Sobic.007G086701 - -
17 Sobic.002G230400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
18 Sobic.003G217300 zinc finger, C3HC4 type family protein, expressed -
19 Sobic.001G261250 - -
20 Sobic.002G099866 - -


Gene co-expression network
sample Sobic008G029900 Sobic008G029900 Sobic007G116766 Sobic007G116766 Sobic008G029900--Sobic007G116766 Sobic009G234500 Sobic009G234500 Sobic008G029900--Sobic009G234500 Sobic008G152500 Sobic008G152500 Sobic008G029900--Sobic008G152500 Sobic007G214800 Sobic007G214800 Sobic008G029900--Sobic007G214800 Sobic006G192800 Sobic006G192800 Sobic008G029900--Sobic006G192800 Sobic003G176375 Sobic003G176375 Sobic008G029900--Sobic003G176375 Sobic010G273800 Sobic010G273800 Sobic008G029900--Sobic010G273800 Sobic007G056900 Sobic007G056900 Sobic008G029900--Sobic007G056900 Sobic001G534400 Sobic001G534400 Sobic008G029900--Sobic001G534400 Sobic004G322901 Sobic004G322901 Sobic007G116766--Sobic004G322901 Sobic002G147466 Sobic002G147466 Sobic007G116766--Sobic002G147466 Sobic005G215100 Sobic005G215100 Sobic007G116766--Sobic005G215100 Sobic009G014900 Sobic009G014900 Sobic007G116766--Sobic009G014900 Sobic010G207900 Sobic010G207900 Sobic007G116766--Sobic010G207900 Sobic002G099866 Sobic002G099866 Sobic007G116766--Sobic002G099866 Sobic007G086701 Sobic007G086701 Sobic007G116766--Sobic007G086701 Sobic001G261529 Sobic001G261529 Sobic007G116766--Sobic001G261529 Sobic003G092600 Sobic003G092600 Sobic007G116766--Sobic003G092600 Sobic009G234500--Sobic001G261529 Sobic002G266600 Sobic002G266600 Sobic009G234500--Sobic002G266600 Sobic009G234500--Sobic002G099866 Sobic002G015800 Sobic002G015800 Sobic009G234500--Sobic002G015800 Sobic001G264600 Sobic001G264600 Sobic009G234500--Sobic001G264600 Sobic001G509100 Sobic001G509100 Sobic009G234500--Sobic001G509100 Sobic003G035001 Sobic003G035001 Sobic009G234500--Sobic003G035001 Sobic009G234500--Sobic003G092600 Sobic005G083280 Sobic005G083280 Sobic009G234500--Sobic005G083280 Sobic006G257600 Sobic006G257600 Sobic008G152500--Sobic006G257600 Sobic008G152500--Sobic008G029900 Sobic008G000700 Sobic008G000700 Sobic008G152500--Sobic008G000700 Sobic008G152500--Sobic006G192800 Sobic008G152500--Sobic007G116766 Sobic009G113100 Sobic009G113100 Sobic008G152500--Sobic009G113100 Sobic001G423300 Sobic001G423300 Sobic008G152500--Sobic001G423300 Sobic002G230400 Sobic002G230400 Sobic008G152500--Sobic002G230400 Sobic006G015500 Sobic006G015500 Sobic008G152500--Sobic006G015500 Sobic002G106000 Sobic002G106000 Sobic007G214800--Sobic002G106000 Sobic007G216800 Sobic007G216800 Sobic007G214800--Sobic007G216800 Sobic007G088700 Sobic007G088700 Sobic007G214800--Sobic007G088700 Sobic002G136200 Sobic002G136200 Sobic007G214800--Sobic002G136200 Sobic008G098700 Sobic008G098700 Sobic007G214800--Sobic008G098700 Sobic001G088450 Sobic001G088450 Sobic007G214800--Sobic001G088450 Sobic007G040050 Sobic007G040050 Sobic007G214800--Sobic007G040050 Sobic009G152140 Sobic009G152140 Sobic007G214800--Sobic009G152140 Sobic009G066600 Sobic009G066600 Sobic007G214800--Sobic009G066600 Sobic004G041100 Sobic004G041100 Sobic006G192800--Sobic004G041100 Sobic005G160200 Sobic005G160200 Sobic006G192800--Sobic005G160200 Sobic004G313500 Sobic004G313500 Sobic006G192800--Sobic004G313500 Sobic008G056200 Sobic008G056200 Sobic006G192800--Sobic008G056200 Sobic003G028400 Sobic003G028400 Sobic006G192800--Sobic003G028400 Sobic001G123600 Sobic001G123600 Sobic006G192800--Sobic001G123600 Sobic008G026400 Sobic008G026400 Sobic006G192800--Sobic008G026400 Sobic006G192800--Sobic008G152500 Sobic003G331000 Sobic003G331000 Sobic006G192800--Sobic003G331000 Sobic003G176375--Sobic007G088700 Sobic003G176375--Sobic007G116766 Sobic003G142200 Sobic003G142200 Sobic003G176375--Sobic003G142200 Sobic003G027000 Sobic003G027000 Sobic003G176375--Sobic003G027000 Sobic005G041900 Sobic005G041900 Sobic003G176375--Sobic005G041900 Sobic003G217300 Sobic003G217300 Sobic003G176375--Sobic003G217300 Sobic004G218000 Sobic004G218000 Sobic003G176375--Sobic004G218000 Sobic003G090000 Sobic003G090000 Sobic003G176375--Sobic003G090000 Sobic006G062600 Sobic006G062600 Sobic003G176375--Sobic006G062600 Sobic006G015800 Sobic006G015800 Sobic010G273800--Sobic006G015800 Sobic010G273800--Sobic003G092600 Sobic004G262100 Sobic004G262100 Sobic010G273800--Sobic004G262100 Sobic001G324800 Sobic001G324800 Sobic010G273800--Sobic001G324800 Sobic010G093400 Sobic010G093400 Sobic010G273800--Sobic010G093400 Sobic010G273800--Sobic002G015800 Sobic009G207500 Sobic009G207500 Sobic010G273800--Sobic009G207500 Sobic001G425900 Sobic001G425900 Sobic010G273800--Sobic001G425900 Sobic004G294100 Sobic004G294100 Sobic010G273800--Sobic004G294100 Sobic007G056900--Sobic004G218000 Sobic005G164800 Sobic005G164800 Sobic007G056900--Sobic005G164800 Sobic007G056900--Sobic003G217300 Sobic002G061800 Sobic002G061800 Sobic007G056900--Sobic002G061800 Sobic006G143300 Sobic006G143300 Sobic007G056900--Sobic006G143300 Sobic007G056900--Sobic005G041900 Sobic001G132200 Sobic001G132200 Sobic007G056900--Sobic001G132200 Sobic009G042600 Sobic009G042600 Sobic007G056900--Sobic009G042600 Sobic007G056900--Sobic006G062600 Sobic010G257500 Sobic010G257500 Sobic001G534400--Sobic010G257500 Sobic003G343200 Sobic003G343200 Sobic001G534400--Sobic003G343200 Sobic010G009600 Sobic010G009600 Sobic001G534400--Sobic010G009600 Sobic008G087200 Sobic008G087200 Sobic001G534400--Sobic008G087200 Sobic004G014100 Sobic004G014100 Sobic001G534400--Sobic004G014100 Sobic001G534400--Sobic005G160200 Sobic006G184200 Sobic006G184200 Sobic001G534400--Sobic006G184200 Sobic008G174500 Sobic008G174500 Sobic001G534400--Sobic008G174500 Sobic002G271400 Sobic002G271400 Sobic001G534400--Sobic002G271400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.