Gene annotation
Transcriptome id Sobic.008G039900.1
Synonym GDCP, GLDP2, Sb08g003440, GLDP2 , AtGLDP2
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
- (PubMedID : 26976818)
glycine dehydrogenase, putative, expressed
UniProt C5YS41
Pfam PF02347
Panther DB PTHR11773 PTHR11773:SF4
NCBI CDD -
KEGG Orthology K00281; GLDC, glycine dehydrogenase
Gene Ontology GO:0006546; glycine catabolic process GO:0004375glycine dehydrogenase (decarboxylating) activity


Orthologs (automatic annotation)
TAIR AT2G26080 : glycine decarboxylase P-protein 2
RAP-DB (Rice) LOC_Os06g40940.1 : glycine dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a053915
Brachypodium KQK09439
Barley HORVU3Hr1G067110.1 , HORVU3Hr1G067110.2 , HORVU3Hr1G067110.3 , HORVU3Hr1G067110.4 , HORVU3Hr1G067110.5 , HORVU3Hr1G067110.6 , HORVU3Hr1G067110.7
Wheat TraesCS3A02G250200 , TraesCS3B02G279700 , TraesCS3D02G250600
Populus -


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cDNA sequences
Sobic.008G039900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G038701 - -
2 Sobic.010G125833 - -
3 Sobic.001G393300 HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed -
4 Sobic.001G504400 expressed protein -
5 Sobic.002G198300 zinc finger, C3HC4 type domain containing protein, expressed -
6 Sobic.003G327000 bZIP transcription factor domain containing protein, expressed -
7 Sobic.010G231200 remorin C-terminal domain containing protein, putative, expressed -
8 Sobic.002G298800 PAP fibrillin family domain containing protein, expressed -
9 Sobic.001G180200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
10 Sobic.009G207900 expressed protein -
11 Sobic.001G283100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@lrgB-like family protein, expressed -
12 Sobic.002G206300 tsi1-interacting protein TSIP1, putative, expressed -
13 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
14 Sobic.004G082300 WD domain, G-beta repeat domain containing protein, expressed -
15 Sobic.009G073900 thioredoxin, putative, expressed -
16 Sobic.006G090100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K09919: uncharacterized protein
17 Sobic.003G220100 - -
18 Sobic.003G203300 stress regulated protein, putative, expressed -
19 Sobic.003G073800 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
20 Sobic.001G470300 - -


Gene co-expression network
sample Sobic008G039900 Sobic008G039900 Sobic009G038701 Sobic009G038701 Sobic008G039900--Sobic009G038701 Sobic010G125833 Sobic010G125833 Sobic008G039900--Sobic010G125833 Sobic001G393300 Sobic001G393300 Sobic008G039900--Sobic001G393300 Sobic001G504400 Sobic001G504400 Sobic008G039900--Sobic001G504400 Sobic002G198300 Sobic002G198300 Sobic008G039900--Sobic002G198300 Sobic003G327000 Sobic003G327000 Sobic008G039900--Sobic003G327000 Sobic010G231200 Sobic010G231200 Sobic008G039900--Sobic010G231200 Sobic002G298800 Sobic002G298800 Sobic008G039900--Sobic002G298800 Sobic001G180200 Sobic001G180200 Sobic008G039900--Sobic001G180200 Sobic002G206300 Sobic002G206300 Sobic009G038701--Sobic002G206300 Sobic009G038701--Sobic010G125833 Sobic009G038701--Sobic001G504400 Sobic009G038701--Sobic001G180200 Sobic001G258200 Sobic001G258200 Sobic009G038701--Sobic001G258200 Sobic003G185900 Sobic003G185900 Sobic009G038701--Sobic003G185900 Sobic008G129900 Sobic008G129900 Sobic009G038701--Sobic008G129900 Sobic008G033000 Sobic008G033000 Sobic009G038701--Sobic008G033000 Sobic009G207900 Sobic009G207900 Sobic009G038701--Sobic009G207900 Sobic010G125833--Sobic009G038701 Sobic010G125833--Sobic001G504400 Sobic010G125833--Sobic002G206300 Sobic010G125833--Sobic008G033000 Sobic010G125833--Sobic002G198300 Sobic010G125833--Sobic003G185900 Sobic010G125833--Sobic008G129900 Sobic010G125833--Sobic002G298800 Sobic010G125833--Sobic001G180200 Sobic001G393300--Sobic002G298800 Sobic007G166300 Sobic007G166300 Sobic001G393300--Sobic007G166300 Sobic001G509200 Sobic001G509200 Sobic001G393300--Sobic001G509200 Sobic004G103300 Sobic004G103300 Sobic001G393300--Sobic004G103300 Sobic003G094100 Sobic003G094100 Sobic001G393300--Sobic003G094100 Sobic007G108900 Sobic007G108900 Sobic001G393300--Sobic007G108900 Sobic001G393300--Sobic002G198300 Sobic007G135800 Sobic007G135800 Sobic001G393300--Sobic007G135800 Sobic002G072500 Sobic002G072500 Sobic001G393300--Sobic002G072500 Sobic001G504400--Sobic002G206300 Sobic007G103400 Sobic007G103400 Sobic001G504400--Sobic007G103400 Sobic001G504400--Sobic009G038701 Sobic001G504400--Sobic003G185900 Sobic001G504400--Sobic001G258200 Sobic001G504400--Sobic010G125833 Sobic001G504400--Sobic008G033000 Sobic001G504400--Sobic001G180200 Sobic001G378100 Sobic001G378100 Sobic001G504400--Sobic001G378100 Sobic002G198300--Sobic002G298800 Sobic002G198300--Sobic001G393300 Sobic002G198300--Sobic007G103400 Sobic001G368600 Sobic001G368600 Sobic002G198300--Sobic001G368600 Sobic002G198300--Sobic010G125833 Sobic002G198300--Sobic001G504400 Sobic002G198300--Sobic001G378100 Sobic003G306200 Sobic003G306200 Sobic002G198300--Sobic003G306200 Sobic001G536700 Sobic001G536700 Sobic002G198300--Sobic001G536700 Sobic003G327000--Sobic009G207900 Sobic003G327000--Sobic003G094100 Sobic003G327000--Sobic001G504400 Sobic003G327000--Sobic001G393300 Sobic003G327000--Sobic002G298800 Sobic003G327000--Sobic009G038701 Sobic003G327000--Sobic007G135800 Sobic003G327000--Sobic002G198300 Sobic003G327000--Sobic010G125833 Sobic010G231200--Sobic009G038701 Sobic010G231200--Sobic010G125833 Sobic004G059800 Sobic004G059800 Sobic010G231200--Sobic004G059800 Sobic003G097600 Sobic003G097600 Sobic010G231200--Sobic003G097600 Sobic010G231200--Sobic003G327000 Sobic001G491000 Sobic001G491000 Sobic010G231200--Sobic001G491000 Sobic007G006400 Sobic007G006400 Sobic010G231200--Sobic007G006400 Sobic010G231200--Sobic001G393300 Sobic010G231200--Sobic002G298800 Sobic002G298800--Sobic001G393300 Sobic002G298800--Sobic002G198300 Sobic002G298800--Sobic004G103300 Sobic002G298800--Sobic007G103400 Sobic006G097500 Sobic006G097500 Sobic002G298800--Sobic006G097500 Sobic002G298800--Sobic001G368600 Sobic002G298800--Sobic003G094100 Sobic004G353100 Sobic004G353100 Sobic002G298800--Sobic004G353100 Sobic002G275300 Sobic002G275300 Sobic002G298800--Sobic002G275300 Sobic003G341300 Sobic003G341300 Sobic001G180200--Sobic003G341300 Sobic001G180200--Sobic002G206300 Sobic001G180200--Sobic007G135800 Sobic001G180200--Sobic009G038701 Sobic001G180200--Sobic009G207900 Sobic001G180200--Sobic003G094100 Sobic001G180200--Sobic001G504400 Sobic001G263100 Sobic001G263100 Sobic001G180200--Sobic001G263100 Sobic002G162400 Sobic002G162400 Sobic001G180200--Sobic002G162400
Octagon: transcription factors


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