Gene annotation
Transcriptome id Sobic.009G036700.1
Synonym Sb09g003110
Functional annotation EGG APPARATUS-1, putative, expressed
UniProt C5YZM1
Pfam -
Panther DB PTHR33333 PTHR33333:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os07g41410.1 : EGG APPARATUS-1, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G036700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G285800 ubiquitin domain-containing protein 1, putative, expressed -
2 Sobic.009G023200 glycine-rich protein A3, putative, expressed -
3 Sobic.002G046100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
4 Sobic.010G052700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA20 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
5 Sobic.008G185400 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C
6 Sobic.001G477300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GRAM domain containing protein, expressed -
7 Sobic.002G187500 hypoxia-responsive family protein, putative, expressed -
8 Sobic.004G192100 uncharacterized Cys-rich domain containing protein, putative, expressed -
9 Sobic.001G252300 pectinesterase, putative, expressed K01051: pectinesterase
10 Sobic.007G087200 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
11 Sobic.009G155200 ZOS5-08 - C2H2 zinc finger protein, expressed -
12 Sobic.003G264500 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
13 Sobic.010G178200 hemoglobin-like protein HbO, putative, expressed -
14 Sobic.004G208700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CHIT1 - Chitinase family protein precursor, expressed K01183: chitinase
15 Sobic.002G359300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ZOS7-07 - C2H2 zinc finger protein, expressed -
16 Sobic.001G281400 expressed protein -
17 Sobic.010G009300 6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed K00033: PGD, gnd, 6-phosphogluconate dehydrogenase
18 Sobic.004G187900 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
19 Sobic.006G143400 expressed protein -
20 Sobic.001G119000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic009G036700 Sobic009G036700 Sobic003G285800 Sobic003G285800 Sobic009G036700--Sobic003G285800 Sobic009G023200 Sobic009G023200 Sobic009G036700--Sobic009G023200 Sobic002G046100 Sobic002G046100 Sobic009G036700--Sobic002G046100 Sobic010G052700 Sobic010G052700 Sobic009G036700--Sobic010G052700 Sobic008G185400 Sobic008G185400 Sobic009G036700--Sobic008G185400 Sobic001G477300 Sobic001G477300 Sobic009G036700--Sobic001G477300 Sobic002G187500 Sobic002G187500 Sobic009G036700--Sobic002G187500 Sobic004G192100 Sobic004G192100 Sobic009G036700--Sobic004G192100 Sobic001G252300 Sobic001G252300 Sobic009G036700--Sobic001G252300 Sobic003G285800--Sobic002G046100 Sobic003G285800--Sobic002G187500 Sobic010G178200 Sobic010G178200 Sobic003G285800--Sobic010G178200 Sobic003G350300 Sobic003G350300 Sobic003G285800--Sobic003G350300 Sobic002G345300 Sobic002G345300 Sobic003G285800--Sobic002G345300 Sobic003G285800--Sobic001G477300 Sobic001G281400 Sobic001G281400 Sobic003G285800--Sobic001G281400 Sobic010G086200 Sobic010G086200 Sobic003G285800--Sobic010G086200 Sobic009G129000 Sobic009G129000 Sobic003G285800--Sobic009G129000 Sobic004G187900 Sobic004G187900 Sobic009G023200--Sobic004G187900 Sobic010G204600 Sobic010G204600 Sobic009G023200--Sobic010G204600 Sobic003G063200 Sobic003G063200 Sobic009G023200--Sobic003G063200 Sobic001G067601 Sobic001G067601 Sobic009G023200--Sobic001G067601 Sobic009G023200--Sobic002G046100 Sobic002G245800 Sobic002G245800 Sobic009G023200--Sobic002G245800 Sobic003G181500 Sobic003G181500 Sobic009G023200--Sobic003G181500 Sobic003G202200 Sobic003G202200 Sobic009G023200--Sobic003G202200 Sobic005G196800 Sobic005G196800 Sobic009G023200--Sobic005G196800 Sobic002G046100--Sobic003G285800 Sobic002G046100--Sobic001G281400 Sobic002G046100--Sobic002G345300 Sobic002G046100--Sobic002G187500 Sobic002G046100--Sobic010G086200 Sobic004G061200 Sobic004G061200 Sobic002G046100--Sobic004G061200 Sobic002G046100--Sobic001G477300 Sobic002G267500 Sobic002G267500 Sobic002G046100--Sobic002G267500 Sobic002G190900 Sobic002G190900 Sobic002G046100--Sobic002G190900 Sobic001G503100 Sobic001G503100 Sobic010G052700--Sobic001G503100 Sobic003G087300 Sobic003G087300 Sobic010G052700--Sobic003G087300 Sobic001G333400 Sobic001G333400 Sobic010G052700--Sobic001G333400 Sobic003G280200 Sobic003G280200 Sobic010G052700--Sobic003G280200 Sobic007G141500 Sobic007G141500 Sobic010G052700--Sobic007G141500 Sobic005G011200 Sobic005G011200 Sobic010G052700--Sobic005G011200 Sobic003G364000 Sobic003G364000 Sobic010G052700--Sobic003G364000 Sobic002G004900 Sobic002G004900 Sobic010G052700--Sobic002G004900 Sobic002G125700 Sobic002G125700 Sobic010G052700--Sobic002G125700 Sobic008G185400--Sobic002G046100 Sobic010G041600 Sobic010G041600 Sobic008G185400--Sobic010G041600 Sobic008G185400--Sobic003G285800 Sobic006G143400 Sobic006G143400 Sobic008G185400--Sobic006G143400 Sobic001G034700 Sobic001G034700 Sobic008G185400--Sobic001G034700 Sobic004G272800 Sobic004G272800 Sobic008G185400--Sobic004G272800 Sobic008G185400--Sobic002G187500 Sobic008G185400--Sobic002G190900 Sobic008G185400--Sobic001G281400 Sobic001G124600 Sobic001G124600 Sobic001G477300--Sobic001G124600 Sobic001G477300--Sobic004G187900 Sobic001G477300--Sobic002G046100 Sobic001G308300 Sobic001G308300 Sobic001G477300--Sobic001G308300 Sobic001G477300--Sobic010G086200 Sobic006G267200 Sobic006G267200 Sobic001G477300--Sobic006G267200 Sobic001G477300--Sobic009G129000 Sobic009G159400 Sobic009G159400 Sobic001G477300--Sobic009G159400 Sobic004G065500 Sobic004G065500 Sobic001G477300--Sobic004G065500 Sobic010G009300 Sobic010G009300 Sobic002G187500--Sobic010G009300 Sobic002G187500--Sobic003G285800 Sobic002G187500--Sobic002G190900 Sobic002G187500--Sobic002G046100 Sobic003G072300 Sobic003G072300 Sobic002G187500--Sobic003G072300 Sobic001G177800 Sobic001G177800 Sobic002G187500--Sobic001G177800 Sobic002G081600 Sobic002G081600 Sobic002G187500--Sobic002G081600 Sobic002G187500--Sobic001G281400 Sobic003G393700 Sobic003G393700 Sobic002G187500--Sobic003G393700 Sobic004G192100--Sobic010G052700 Sobic009G077800 Sobic009G077800 Sobic004G192100--Sobic009G077800 Sobic009G221400 Sobic009G221400 Sobic004G192100--Sobic009G221400 Sobic001G091600 Sobic001G091600 Sobic004G192100--Sobic001G091600 Sobic003G297600 Sobic003G297600 Sobic004G192100--Sobic003G297600 Sobic002G353900 Sobic002G353900 Sobic004G192100--Sobic002G353900 Sobic007G025500 Sobic007G025500 Sobic004G192100--Sobic007G025500 Sobic002G302500 Sobic002G302500 Sobic004G192100--Sobic002G302500 Sobic004G192100--Sobic002G004900 Sobic002G414600 Sobic002G414600 Sobic001G252300--Sobic002G414600 Sobic004G166700 Sobic004G166700 Sobic001G252300--Sobic004G166700 Sobic005G051200 Sobic005G051200 Sobic001G252300--Sobic005G051200 Sobic004G208700 Sobic004G208700 Sobic001G252300--Sobic004G208700 Sobic001G317200 Sobic001G317200 Sobic001G252300--Sobic001G317200 Sobic001G252300--Sobic003G297600 Sobic002G416600 Sobic002G416600 Sobic001G252300--Sobic002G416600 Sobic008G050600 Sobic008G050600 Sobic001G252300--Sobic008G050600 Sobic003G286600 Sobic003G286600 Sobic001G252300--Sobic003G286600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.