Gene annotation
Transcriptome id Sobic.009G195400.1
Synonym Sb09g025380
Functional annotation 50S ribosomal protein L33, putative, expressed
UniProt C5Z0W6
Pfam PF00471
Panther DB PTHR15238 PTHR15238:SF10
NCBI CDD KOG3505; Mitochondrial/chloroplast ribosomal protein L33-like
KEGG Orthology K02913; RP-L33, MRPL33, large subunit ribosomal protein L33
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G06320 : Ribosomal protein L33 family protein
RAP-DB (Rice) LOC_Os05g37884.1 : 50S ribosomal protein L33, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU1Hr1G076930.1
Wheat -
Populus -


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cDNA sequences
Sobic.009G195400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G147000 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
2 Sobic.004G331400 60S ribosomal protein L39, putative, expressed K02924: RP-L39e, large subunit ribosomal protein L39e
3 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
4 Sobic.007G190800 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17780: mitochondrial import inner membrane translocase subunit TIM8
5 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
6 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
7 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
8 Sobic.010G259900 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
9 Sobic.001G048832 - -
10 Sobic.001G036900 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
11 Sobic.004G104300 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
12 Sobic.001G086300 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
13 Sobic.006G211200 expressed protein -
14 Sobic.010G204500 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
15 Sobic.004G322200 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
16 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
17 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
18 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
19 Sobic.001G533500 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17777: mitochondrial import inner membrane translocase subunit TIM9
20 Sobic.004G196400 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1


Gene co-expression network
sample Sobic009G195400 Sobic009G195400 Sobic006G147000 Sobic006G147000 Sobic009G195400--Sobic006G147000 Sobic004G331400 Sobic004G331400 Sobic009G195400--Sobic004G331400 Sobic009G163800 Sobic009G163800 Sobic009G195400--Sobic009G163800 Sobic007G190800 Sobic007G190800 Sobic009G195400--Sobic007G190800 Sobic009G215200 Sobic009G215200 Sobic009G195400--Sobic009G215200 Sobic007G019000 Sobic007G019000 Sobic009G195400--Sobic007G019000 Sobic007G178600 Sobic007G178600 Sobic009G195400--Sobic007G178600 Sobic010G259900 Sobic010G259900 Sobic009G195400--Sobic010G259900 Sobic001G048832 Sobic001G048832 Sobic009G195400--Sobic001G048832 Sobic003G346600 Sobic003G346600 Sobic006G147000--Sobic003G346600 Sobic006G147000--Sobic009G163800 Sobic010G060500 Sobic010G060500 Sobic006G147000--Sobic010G060500 Sobic009G166500 Sobic009G166500 Sobic006G147000--Sobic009G166500 Sobic002G081600 Sobic002G081600 Sobic006G147000--Sobic002G081600 Sobic006G147000--Sobic007G178600 Sobic003G322400 Sobic003G322400 Sobic006G147000--Sobic003G322400 Sobic009G050300 Sobic009G050300 Sobic006G147000--Sobic009G050300 Sobic007G212600 Sobic007G212600 Sobic006G147000--Sobic007G212600 Sobic002G175100 Sobic002G175100 Sobic004G331400--Sobic002G175100 Sobic001G376600 Sobic001G376600 Sobic004G331400--Sobic001G376600 Sobic004G331400--Sobic009G163800 Sobic009G105700 Sobic009G105700 Sobic004G331400--Sobic009G105700 Sobic003G408100 Sobic003G408100 Sobic004G331400--Sobic003G408100 Sobic004G331400--Sobic003G346600 Sobic004G331400--Sobic009G050300 Sobic004G331400--Sobic007G178600 Sobic001G091801 Sobic001G091801 Sobic004G331400--Sobic001G091801 Sobic009G163800--Sobic009G166500 Sobic009G163800--Sobic009G050300 Sobic009G163800--Sobic003G346600 Sobic007G138700 Sobic007G138700 Sobic009G163800--Sobic007G138700 Sobic006G047400 Sobic006G047400 Sobic009G163800--Sobic006G047400 Sobic009G163800--Sobic003G408100 Sobic009G163800--Sobic004G331400 Sobic009G163800--Sobic002G081600 Sobic009G163800--Sobic001G091801 Sobic010G230700 Sobic010G230700 Sobic007G190800--Sobic010G230700 Sobic005G019700 Sobic005G019700 Sobic007G190800--Sobic005G019700 Sobic004G104100 Sobic004G104100 Sobic007G190800--Sobic004G104100 Sobic007G190800--Sobic009G050300 Sobic004G104300 Sobic004G104300 Sobic007G190800--Sobic004G104300 Sobic007G190800--Sobic007G019000 Sobic007G018300 Sobic007G018300 Sobic007G190800--Sobic007G018300 Sobic007G190800--Sobic007G212600 Sobic001G403500 Sobic001G403500 Sobic007G190800--Sobic001G403500 Sobic006G116700 Sobic006G116700 Sobic009G215200--Sobic006G116700 Sobic009G215200--Sobic009G050300 Sobic001G130301 Sobic001G130301 Sobic009G215200--Sobic001G130301 Sobic009G215200--Sobic002G081600 Sobic001G018900 Sobic001G018900 Sobic009G215200--Sobic001G018900 Sobic007G197800 Sobic007G197800 Sobic009G215200--Sobic007G197800 Sobic009G215200--Sobic001G403500 Sobic001G016400 Sobic001G016400 Sobic009G215200--Sobic001G016400 Sobic001G374700 Sobic001G374700 Sobic009G215200--Sobic001G374700 Sobic007G019000--Sobic007G178600 Sobic001G054900 Sobic001G054900 Sobic007G019000--Sobic001G054900 Sobic007G019000--Sobic009G050300 Sobic004G322200 Sobic004G322200 Sobic007G019000--Sobic004G322200 Sobic007G019000--Sobic007G018300 Sobic004G103800 Sobic004G103800 Sobic007G019000--Sobic004G103800 Sobic007G019000--Sobic010G230700 Sobic002G115000 Sobic002G115000 Sobic007G019000--Sobic002G115000 Sobic001G533500 Sobic001G533500 Sobic007G019000--Sobic001G533500 Sobic004G008400 Sobic004G008400 Sobic007G178600--Sobic004G008400 Sobic007G178600--Sobic007G019000 Sobic007G178600--Sobic003G346600 Sobic007G178600--Sobic009G050300 Sobic008G108601 Sobic008G108601 Sobic007G178600--Sobic008G108601 Sobic006G221200 Sobic006G221200 Sobic007G178600--Sobic006G221200 Sobic007G178600--Sobic009G163800 Sobic003G249700 Sobic003G249700 Sobic007G178600--Sobic003G249700 Sobic002G047600 Sobic002G047600 Sobic007G178600--Sobic002G047600 Sobic010G260100 Sobic010G260100 Sobic010G259900--Sobic010G260100 Sobic010G259900--Sobic004G104300 Sobic010G259900--Sobic003G322400 Sobic010G259900--Sobic007G212600 Sobic010G259900--Sobic004G103800 Sobic003G321700 Sobic003G321700 Sobic010G259900--Sobic003G321700 Sobic010G259900--Sobic007G018300 Sobic010G259900--Sobic001G091801 Sobic001G046300 Sobic001G046300 Sobic010G259900--Sobic001G046300 Sobic010G154700 Sobic010G154700 Sobic001G048832--Sobic010G154700 Sobic001G132100 Sobic001G132100 Sobic001G048832--Sobic001G132100 Sobic007G051000 Sobic007G051000 Sobic001G048832--Sobic007G051000 Sobic009G176000 Sobic009G176000 Sobic001G048832--Sobic009G176000 Sobic005G188100 Sobic005G188100 Sobic001G048832--Sobic005G188100 Sobic002G190900 Sobic002G190900 Sobic001G048832--Sobic002G190900 Sobic009G119900 Sobic009G119900 Sobic001G048832--Sobic009G119900 Sobic004G272800 Sobic004G272800 Sobic001G048832--Sobic004G272800 Sobic002G398901 Sobic002G398901 Sobic001G048832--Sobic002G398901
Octagon: transcription factors


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