Gene annotation
Transcriptome id Sobic.009G260600.1
Synonym HDA3, HDT1, HD2A, Sb09g030950, ATHD2A
Functional annotation ZOS5-12 - C2H2 zinc finger protein, expressed
UniProt C5YX40
Pfam -
Panther DB PTHR31802
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G44750 : histone deacetylase 3
RAP-DB (Rice) LOC_Os05g51830.1 : ZOS5-12 - C2H2 zinc finger protein, expressed
MaizeGDB (Corn) Zm00025a044360 , Zm00025a038323
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.009G260600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G485000 expressed protein -
2 Sobic.001G364900 expressed protein -
3 Sobic.010G232300 ubiquitin family protein, expressed -
4 Sobic.002G013550 - K08770: ubiquitin C
5 Sobic.001G015000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nuclear antigen, putative, expressed -
6 Sobic.001G242200 MBTB35 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
7 Sobic.004G022366 - -
8 Sobic.006G124500 Regulator of chromosome condensation domain containing protein, expressed -
9 Sobic.009G240500 lipase class 3 family protein, putative, expressed -
10 Sobic.004G174600 "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@multidrug resistance protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
11 Sobic.003G018000 expressed protein -
12 Sobic.002G034700 similar to Putative uncharacterized protein(PubMedID : 29862293)@CAMK_KIN1/SNF1/Nim1_like.28 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
13 Sobic.003G354850 - -
14 Sobic.005G212300 MBTB24 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
15 Sobic.002G100300 OsFBD15 - F-box and FBD domain containing protein, expressed -
16 Sobic.003G090200 seven in absentia protein family domain containing protein, expressed -
17 Sobic.006G018000 expressed protein -
18 Sobic.005G171900 expressed protein -
19 Sobic.009G063200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein of unknown function domain containing protein, expressed -
20 Sobic.004G203000 cytochrome P450, putative, expressed K15402: fatty acid omega-hydroxylase


Gene co-expression network
sample Sobic009G260600 Sobic009G260600 Sobic001G485000 Sobic001G485000 Sobic009G260600--Sobic001G485000 Sobic001G364900 Sobic001G364900 Sobic009G260600--Sobic001G364900 Sobic010G232300 Sobic010G232300 Sobic009G260600--Sobic010G232300 Sobic002G013550 Sobic002G013550 Sobic009G260600--Sobic002G013550 Sobic001G015000 Sobic001G015000 Sobic009G260600--Sobic001G015000 Sobic001G242200 Sobic001G242200 Sobic009G260600--Sobic001G242200 Sobic004G022366 Sobic004G022366 Sobic009G260600--Sobic004G022366 Sobic006G124500 Sobic006G124500 Sobic009G260600--Sobic006G124500 Sobic009G240500 Sobic009G240500 Sobic009G260600--Sobic009G240500 Sobic001G485000--Sobic001G015000 Sobic001G103600 Sobic001G103600 Sobic001G485000--Sobic001G103600 Sobic001G485000--Sobic009G240500 Sobic008G095500 Sobic008G095500 Sobic001G485000--Sobic008G095500 Sobic003G018000 Sobic003G018000 Sobic001G485000--Sobic003G018000 Sobic001G485000--Sobic001G242200 Sobic004G002700 Sobic004G002700 Sobic001G485000--Sobic004G002700 Sobic001G485000--Sobic002G013550 Sobic009G149100 Sobic009G149100 Sobic001G485000--Sobic009G149100 Sobic010G094400 Sobic010G094400 Sobic001G364900--Sobic010G094400 Sobic001G364900--Sobic004G022366 Sobic001G364900--Sobic002G013550 Sobic001G364900--Sobic001G242200 Sobic001G364900--Sobic003G018000 Sobic003G090200 Sobic003G090200 Sobic001G364900--Sobic003G090200 Sobic002G100300 Sobic002G100300 Sobic001G364900--Sobic002G100300 Sobic005G212300 Sobic005G212300 Sobic001G364900--Sobic005G212300 Sobic003G354850 Sobic003G354850 Sobic001G364900--Sobic003G354850 Sobic001G034200 Sobic001G034200 Sobic010G232300--Sobic001G034200 Sobic002G080450 Sobic002G080450 Sobic010G232300--Sobic002G080450 Sobic003G127900 Sobic003G127900 Sobic010G232300--Sobic003G127900 Sobic003G065700 Sobic003G065700 Sobic010G232300--Sobic003G065700 Sobic007G112832 Sobic007G112832 Sobic010G232300--Sobic007G112832 Sobic008G056800 Sobic008G056800 Sobic010G232300--Sobic008G056800 Sobic010G129450 Sobic010G129450 Sobic010G232300--Sobic010G129450 Sobic003G218000 Sobic003G218000 Sobic010G232300--Sobic003G218000 Sobic005G052400 Sobic005G052400 Sobic010G232300--Sobic005G052400 Sobic002G013550--Sobic009G149100 Sobic004G254700 Sobic004G254700 Sobic002G013550--Sobic004G254700 Sobic008G071700 Sobic008G071700 Sobic002G013550--Sobic008G071700 Sobic002G019300 Sobic002G019300 Sobic002G013550--Sobic002G019300 Sobic006G276600 Sobic006G276600 Sobic002G013550--Sobic006G276600 Sobic004G335400 Sobic004G335400 Sobic002G013550--Sobic004G335400 Sobic005G006900 Sobic005G006900 Sobic002G013550--Sobic005G006900 Sobic002G298600 Sobic002G298600 Sobic002G013550--Sobic002G298600 Sobic005G041500 Sobic005G041500 Sobic002G013550--Sobic005G041500 Sobic001G015000--Sobic004G254700 Sobic001G015000--Sobic001G103600 Sobic001G015000--Sobic002G019300 Sobic001G015000--Sobic009G149100 Sobic001G015000--Sobic006G276600 Sobic001G015000--Sobic004G335400 Sobic001G015000--Sobic008G071700 Sobic001G015000--Sobic005G041500 Sobic001G015000--Sobic002G298600 Sobic001G242200--Sobic009G240500 Sobic001G242200--Sobic002G013550 Sobic001G242200--Sobic008G071700 Sobic001G242200--Sobic005G006900 Sobic001G242200--Sobic003G090200 Sobic001G242200--Sobic002G100300 Sobic001G242200--Sobic005G212300 Sobic001G242200--Sobic003G354850 Sobic001G242200--Sobic009G149100 Sobic002G298500 Sobic002G298500 Sobic004G022366--Sobic002G298500 Sobic001G355300 Sobic001G355300 Sobic004G022366--Sobic001G355300 Sobic006G018000 Sobic006G018000 Sobic004G022366--Sobic006G018000 Sobic003G180700 Sobic003G180700 Sobic004G022366--Sobic003G180700 Sobic007G219300 Sobic007G219300 Sobic004G022366--Sobic007G219300 Sobic009G067100 Sobic009G067100 Sobic004G022366--Sobic009G067100 Sobic007G083500 Sobic007G083500 Sobic004G022366--Sobic007G083500 Sobic004G022366--Sobic006G124500 Sobic002G121100 Sobic002G121100 Sobic004G022366--Sobic002G121100 Sobic006G124500--Sobic006G018000 Sobic006G124500--Sobic003G354850 Sobic006G124500--Sobic005G212300 Sobic006G124500--Sobic002G100300 Sobic006G124500--Sobic003G090200 Sobic006G124500--Sobic002G298500 Sobic002G123400 Sobic002G123400 Sobic006G124500--Sobic002G123400 Sobic006G124500--Sobic007G083500 Sobic006G124500--Sobic009G067100 Sobic009G240500--Sobic001G242200 Sobic009G240500--Sobic009G149100 Sobic009G240500--Sobic005G006900 Sobic009G240500--Sobic008G071700 Sobic009G240500--Sobic004G254700 Sobic009G240500--Sobic006G276600 Sobic009G240500--Sobic002G019300 Sobic009G240500--Sobic005G041500 Sobic009G240500--Sobic004G002700
Octagon: transcription factors


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