Gene annotation
Transcriptome id Sobic.009G063200.1
Synonym Sb09g005260
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
protein of unknown function domain containing protein, expressed
UniProt C5Z151
Pfam PF01918
Panther DB PTHR31947 PTHR31947:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G34160 : Alba DNA/RNA-binding protein
RAP-DB (Rice) LOC_Os01g07810.1 : protein of unknown function domain containing protein, expressed
MaizeGDB (Corn) Zm00025a036853
Brachypodium -
Barley HORVU1Hr1G025500.3 , HORVU1Hr1G025500.2 , HORVU1Hr1G025500.1 , HORVU1Hr1G025500.4
Wheat -
Populus -


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cDNA sequences
Sobic.009G063200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G217800 OsFBLD9 - F-box, LRR and FBD domain containing protein, expressed -
2 Sobic.010G217700 clathrin assembly protein, putative, expressed -
3 Sobic.002G248700 expressed protein -
4 Sobic.002G298201 - K11593: ELF2C, eukaryotic translation initiation factor 2C
5 Sobic.006G256700 VQ domain containing protein, putative, expressed -
6 Sobic.003G065700 expressed protein -
7 Sobic.004G288000 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.004G250800 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
9 Sobic.005G077600 OsFBO22 - F-box and other domain containing protein, expressed -
10 Sobic.001G386900 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
11 Sobic.009G049701 - -
12 Sobic.006G232700 BTBN12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
13 Sobic.001G196400 transmembrane and coiled-coil domain-containing protein 4, putative, expressed -
14 Sobic.009G246600 - -
15 Sobic.007G057201 - -
16 Sobic.001G099700 Invertase genes(PubMedID : 24456189)@Sugar degradation(PubMedID : 27330561)@glycosyl hydrolases, putative, expressed K01193: INV, beta-fructofuranosidase
17 Sobic.008G145500 - -
18 Sobic.010G232300 ubiquitin family protein, expressed -
19 Sobic.006G070564 - K01193: INV, beta-fructofuranosidase
20 Sobic.003G127900 plastocyanin-like domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic009G063200 Sobic009G063200 Sobic002G217800 Sobic002G217800 Sobic009G063200--Sobic002G217800 Sobic010G217700 Sobic010G217700 Sobic009G063200--Sobic010G217700 Sobic002G248700 Sobic002G248700 Sobic009G063200--Sobic002G248700 Sobic002G298201 Sobic002G298201 Sobic009G063200--Sobic002G298201 Sobic006G256700 Sobic006G256700 Sobic009G063200--Sobic006G256700 Sobic003G065700 Sobic003G065700 Sobic009G063200--Sobic003G065700 Sobic004G288000 Sobic004G288000 Sobic009G063200--Sobic004G288000 Sobic004G250800 Sobic004G250800 Sobic009G063200--Sobic004G250800 Sobic005G077600 Sobic005G077600 Sobic009G063200--Sobic005G077600 Sobic008G145500 Sobic008G145500 Sobic002G217800--Sobic008G145500 Sobic002G217800--Sobic002G298201 Sobic001G386900 Sobic001G386900 Sobic002G217800--Sobic001G386900 Sobic003G317000 Sobic003G317000 Sobic002G217800--Sobic003G317000 Sobic007G127800 Sobic007G127800 Sobic002G217800--Sobic007G127800 Sobic007G161100 Sobic007G161100 Sobic002G217800--Sobic007G161100 Sobic007G102900 Sobic007G102900 Sobic002G217800--Sobic007G102900 Sobic002G217800--Sobic004G250800 Sobic002G295300 Sobic002G295300 Sobic002G217800--Sobic002G295300 Sobic010G217700--Sobic007G161100 Sobic001G196400 Sobic001G196400 Sobic010G217700--Sobic001G196400 Sobic004G059200 Sobic004G059200 Sobic010G217700--Sobic004G059200 Sobic003G208900 Sobic003G208900 Sobic010G217700--Sobic003G208900 Sobic004G327000 Sobic004G327000 Sobic010G217700--Sobic004G327000 Sobic004G348000 Sobic004G348000 Sobic010G217700--Sobic004G348000 Sobic006G232700 Sobic006G232700 Sobic010G217700--Sobic006G232700 Sobic010G217700--Sobic003G317000 Sobic005G039000 Sobic005G039000 Sobic010G217700--Sobic005G039000 Sobic002G087600 Sobic002G087600 Sobic002G248700--Sobic002G087600 Sobic002G248700--Sobic010G217700 Sobic009G042800 Sobic009G042800 Sobic002G248700--Sobic009G042800 Sobic003G307500 Sobic003G307500 Sobic002G248700--Sobic003G307500 Sobic006G066050 Sobic006G066050 Sobic002G248700--Sobic006G066050 Sobic008G180000 Sobic008G180000 Sobic002G248700--Sobic008G180000 Sobic009G021000 Sobic009G021000 Sobic002G248700--Sobic009G021000 Sobic008G071300 Sobic008G071300 Sobic002G248700--Sobic008G071300 Sobic009G125100 Sobic009G125100 Sobic002G248700--Sobic009G125100 Sobic002G298201--Sobic003G317000 Sobic005G049900 Sobic005G049900 Sobic002G298201--Sobic005G049900 Sobic002G298201--Sobic001G196400 Sobic002G298201--Sobic006G232700 Sobic001G136150 Sobic001G136150 Sobic002G298201--Sobic001G136150 Sobic002G034200 Sobic002G034200 Sobic002G298201--Sobic002G034200 Sobic005G147900 Sobic005G147900 Sobic002G298201--Sobic005G147900 Sobic002G298201--Sobic007G161100 Sobic003G305500 Sobic003G305500 Sobic002G298201--Sobic003G305500 Sobic006G256700--Sobic010G217700 Sobic007G112832 Sobic007G112832 Sobic006G256700--Sobic007G112832 Sobic001G503600 Sobic001G503600 Sobic006G256700--Sobic001G503600 Sobic001G039100 Sobic001G039100 Sobic006G256700--Sobic001G039100 Sobic002G015200 Sobic002G015200 Sobic006G256700--Sobic002G015200 Sobic008G050900 Sobic008G050900 Sobic006G256700--Sobic008G050900 Sobic004G318900 Sobic004G318900 Sobic006G256700--Sobic004G318900 Sobic005G074300 Sobic005G074300 Sobic006G256700--Sobic005G074300 Sobic003G064100 Sobic003G064100 Sobic006G256700--Sobic003G064100 Sobic009G049701 Sobic009G049701 Sobic003G065700--Sobic009G049701 Sobic001G024100 Sobic001G024100 Sobic003G065700--Sobic001G024100 Sobic004G020200 Sobic004G020200 Sobic003G065700--Sobic004G020200 Sobic003G127900 Sobic003G127900 Sobic003G065700--Sobic003G127900 Sobic003G065700--Sobic002G295300 Sobic010G232300 Sobic010G232300 Sobic003G065700--Sobic010G232300 Sobic001G136000 Sobic001G136000 Sobic003G065700--Sobic001G136000 Sobic008G029800 Sobic008G029800 Sobic003G065700--Sobic008G029800 Sobic003G065700--Sobic005G077600 Sobic004G031900 Sobic004G031900 Sobic004G288000--Sobic004G031900 Sobic004G060400 Sobic004G060400 Sobic004G288000--Sobic004G060400 Sobic009G249400 Sobic009G249400 Sobic004G288000--Sobic009G249400 Sobic010G187800 Sobic010G187800 Sobic004G288000--Sobic010G187800 Sobic008G191900 Sobic008G191900 Sobic004G288000--Sobic008G191900 Sobic002G359100 Sobic002G359100 Sobic004G288000--Sobic002G359100 Sobic009G176200 Sobic009G176200 Sobic004G288000--Sobic009G176200 Sobic003G066300 Sobic003G066300 Sobic004G288000--Sobic003G066300 Sobic010G074000 Sobic010G074000 Sobic004G288000--Sobic010G074000 Sobic006G115700 Sobic006G115700 Sobic004G250800--Sobic006G115700 Sobic006G171600 Sobic006G171600 Sobic004G250800--Sobic006G171600 Sobic008G007600 Sobic008G007600 Sobic004G250800--Sobic008G007600 Sobic002G364700 Sobic002G364700 Sobic004G250800--Sobic002G364700 Sobic002G299500 Sobic002G299500 Sobic004G250800--Sobic002G299500 Sobic009G061500 Sobic009G061500 Sobic004G250800--Sobic009G061500 Sobic008G165401 Sobic008G165401 Sobic004G250800--Sobic008G165401 Sobic002G307400 Sobic002G307400 Sobic004G250800--Sobic002G307400 Sobic001G135800 Sobic001G135800 Sobic004G250800--Sobic001G135800 Sobic005G077600--Sobic009G049701 Sobic007G057201 Sobic007G057201 Sobic005G077600--Sobic007G057201 Sobic005G077600--Sobic003G127900 Sobic005G077600--Sobic003G065700 Sobic001G129150 Sobic001G129150 Sobic005G077600--Sobic001G129150 Sobic005G077600--Sobic001G386900 Sobic005G077600--Sobic002G298201 Sobic005G077600--Sobic006G232700 Sobic005G077600--Sobic003G317000
Octagon: transcription factors


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