Gene annotation
Transcriptome id Sobic.010G037400.1,Sobic.010G037400.3,Sobic.010G037400.2,Sobic.010G037400.4
Synonym Sb10g003320
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A194YH80 , A0A194YH52 , A0A194YH58 , A0A194YI74
Pfam PF00076
Panther DB PTHR10501 PTHR10501:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0017069; snRNA binding GO:0000398mRNA splicing, via spliceosome GO:0003676nucleic acid binding GO:0017069snRNA binding GO:0000398mRNA splicing, via spliceosome


Orthologs (automatic annotation)
TAIR AT1G21320 : nucleotide binding;nucleic acid binding,RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os06g05530.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a050035
Brachypodium KQK19875
Barley HORVU7Hr1G021340.3 , HORVU7Hr1G021340.1 , HORVU7Hr1G021340.8 , HORVU7Hr1G021340.7 , HORVU7Hr1G021340.6 , HORVU7Hr1G021340.5 , HORVU7Hr1G021340.4 , HORVU7Hr1G021340.9
Wheat TraesCS7A02G096900 , TraesCS4A02G396800 , TraesCS7D02G093000 , TraesCS4A02G396800
Populus -


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cDNA sequences
Sobic.010G037400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G091600 proline rich protein 3, putative, expressed -
2 Sobic.010G000300 transmembrane BAX inhibitor motif-containing protein, putative, expressed -
3 Sobic.010G266500 BRE, putative, expressed K12173: BRE, BRCA1-A complex subunit BRE
4 Sobic.001G249700 expressed protein K11877: PSMG3, proteasome assembly chaperone 3
5 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
6 Sobic.003G220700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
7 Sobic.004G186000 salt tolerant protein, putative, expressed -
8 Sobic.009G164000 tentative name(PubMedID : 31536532)@cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
9 Sobic.002G242200 expressed protein -
10 Sobic.007G187600 pentatricopeptide, putative, expressed -
11 Sobic.009G058500 phosphatidylinositolglycan-related, putative, expressed K03858: PIGH, phosphatidylinositol N-acetylglucosaminyltransferase subunit H
12 Sobic.010G108900 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
13 Sobic.001G168900 bacterial transferase hexapeptide domain containing protein, expressed K03241: translation initiation factor eIF-2B subunit gamma
14 Sobic.004G156732 - -
15 Sobic.010G118000 PHD-finger family protein, expressed K17586: PHD and RING finger domain-containing protein 1
16 Sobic.007G191700 expressed protein K08507: unconventional SNARE in the endoplasmic reticulum protein 1
17 Sobic.001G497900 XS domain containing protein, expressed -
18 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -
19 Sobic.002G361400 frigida, putative, expressed -
20 Sobic.006G233300 RNA binding protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3


Gene co-expression network
sample Sobic010G037400 Sobic010G037400 Sobic007G091600 Sobic007G091600 Sobic010G037400--Sobic007G091600 Sobic010G000300 Sobic010G000300 Sobic010G037400--Sobic010G000300 Sobic010G266500 Sobic010G266500 Sobic010G037400--Sobic010G266500 Sobic001G249700 Sobic001G249700 Sobic010G037400--Sobic001G249700 Sobic001G114500 Sobic001G114500 Sobic010G037400--Sobic001G114500 Sobic003G220700 Sobic003G220700 Sobic010G037400--Sobic003G220700 Sobic004G186000 Sobic004G186000 Sobic010G037400--Sobic004G186000 Sobic009G164000 Sobic009G164000 Sobic010G037400--Sobic009G164000 Sobic002G242200 Sobic002G242200 Sobic010G037400--Sobic002G242200 Sobic006G118700 Sobic006G118700 Sobic007G091600--Sobic006G118700 Sobic007G191700 Sobic007G191700 Sobic007G091600--Sobic007G191700 Sobic002G264200 Sobic002G264200 Sobic007G091600--Sobic002G264200 Sobic004G084300 Sobic004G084300 Sobic007G091600--Sobic004G084300 Sobic005G021500 Sobic005G021500 Sobic007G091600--Sobic005G021500 Sobic010G236400 Sobic010G236400 Sobic007G091600--Sobic010G236400 Sobic009G177500 Sobic009G177500 Sobic007G091600--Sobic009G177500 Sobic004G129300 Sobic004G129300 Sobic007G091600--Sobic004G129300 Sobic003G394300 Sobic003G394300 Sobic007G091600--Sobic003G394300 Sobic007G166100 Sobic007G166100 Sobic010G000300--Sobic007G166100 Sobic001G218800 Sobic001G218800 Sobic010G000300--Sobic001G218800 Sobic010G000300--Sobic010G037400 Sobic002G347000 Sobic002G347000 Sobic010G000300--Sobic002G347000 Sobic003G123000 Sobic003G123000 Sobic010G000300--Sobic003G123000 Sobic010G000300--Sobic001G114500 Sobic003G071000 Sobic003G071000 Sobic010G000300--Sobic003G071000 Sobic003G273400 Sobic003G273400 Sobic010G000300--Sobic003G273400 Sobic009G049300 Sobic009G049300 Sobic010G000300--Sobic009G049300 Sobic008G164600 Sobic008G164600 Sobic010G266500--Sobic008G164600 Sobic007G187600 Sobic007G187600 Sobic010G266500--Sobic007G187600 Sobic001G023800 Sobic001G023800 Sobic010G266500--Sobic001G023800 Sobic001G461400 Sobic001G461400 Sobic010G266500--Sobic001G461400 Sobic002G371700 Sobic002G371700 Sobic010G266500--Sobic002G371700 Sobic003G416700 Sobic003G416700 Sobic010G266500--Sobic003G416700 Sobic002G145800 Sobic002G145800 Sobic010G266500--Sobic002G145800 Sobic004G155600 Sobic004G155600 Sobic010G266500--Sobic004G155600 Sobic010G118000 Sobic010G118000 Sobic010G266500--Sobic010G118000 Sobic009G033900 Sobic009G033900 Sobic001G249700--Sobic009G033900 Sobic010G247400 Sobic010G247400 Sobic001G249700--Sobic010G247400 Sobic001G249700--Sobic009G164000 Sobic004G156800 Sobic004G156800 Sobic001G249700--Sobic004G156800 Sobic002G256200 Sobic002G256200 Sobic001G249700--Sobic002G256200 Sobic001G259000 Sobic001G259000 Sobic001G249700--Sobic001G259000 Sobic006G270600 Sobic006G270600 Sobic001G249700--Sobic006G270600 Sobic001G168900 Sobic001G168900 Sobic001G249700--Sobic001G168900 Sobic004G356900 Sobic004G356900 Sobic001G249700--Sobic004G356900 Sobic003G132000 Sobic003G132000 Sobic001G114500--Sobic003G132000 Sobic003G121300 Sobic003G121300 Sobic001G114500--Sobic003G121300 Sobic008G103300 Sobic008G103300 Sobic001G114500--Sobic008G103300 Sobic001G114500--Sobic009G164000 Sobic001G473600 Sobic001G473600 Sobic001G114500--Sobic001G473600 Sobic007G084100 Sobic007G084100 Sobic001G114500--Sobic007G084100 Sobic005G160400 Sobic005G160400 Sobic001G114500--Sobic005G160400 Sobic009G258400 Sobic009G258400 Sobic001G114500--Sobic009G258400 Sobic001G114500--Sobic004G156800 Sobic005G114400 Sobic005G114400 Sobic003G220700--Sobic005G114400 Sobic007G071200 Sobic007G071200 Sobic003G220700--Sobic007G071200 Sobic001G226000 Sobic001G226000 Sobic003G220700--Sobic001G226000 Sobic003G220700--Sobic004G129300 Sobic003G220700--Sobic007G191700 Sobic010G279700 Sobic010G279700 Sobic003G220700--Sobic010G279700 Sobic002G268400 Sobic002G268400 Sobic003G220700--Sobic002G268400 Sobic006G252100 Sobic006G252100 Sobic003G220700--Sobic006G252100 Sobic002G357100 Sobic002G357100 Sobic003G220700--Sobic002G357100 Sobic002G204000 Sobic002G204000 Sobic004G186000--Sobic002G204000 Sobic001G038100 Sobic001G038100 Sobic004G186000--Sobic001G038100 Sobic008G128600 Sobic008G128600 Sobic004G186000--Sobic008G128600 Sobic010G028300 Sobic010G028300 Sobic004G186000--Sobic010G028300 Sobic004G186000--Sobic001G473600 Sobic006G252300 Sobic006G252300 Sobic004G186000--Sobic006G252300 Sobic004G186000--Sobic007G191700 Sobic001G507400 Sobic001G507400 Sobic004G186000--Sobic001G507400 Sobic001G131800 Sobic001G131800 Sobic004G186000--Sobic001G131800 Sobic004G176400 Sobic004G176400 Sobic009G164000--Sobic004G176400 Sobic003G422900 Sobic003G422900 Sobic009G164000--Sobic003G422900 Sobic009G164000--Sobic002G371700 Sobic009G164000--Sobic001G114500 Sobic009G164000--Sobic003G132000 Sobic009G164000--Sobic008G103300 Sobic004G353000 Sobic004G353000 Sobic009G164000--Sobic004G353000 Sobic002G300700 Sobic002G300700 Sobic009G164000--Sobic002G300700 Sobic009G164000--Sobic001G249700 Sobic007G097900 Sobic007G097900 Sobic002G242200--Sobic007G097900 Sobic002G242200--Sobic005G160400 Sobic003G127300 Sobic003G127300 Sobic002G242200--Sobic003G127300 Sobic003G299000 Sobic003G299000 Sobic002G242200--Sobic003G299000 Sobic010G092300 Sobic010G092300 Sobic002G242200--Sobic010G092300 Sobic001G207500 Sobic001G207500 Sobic002G242200--Sobic001G207500 Sobic010G265300 Sobic010G265300 Sobic002G242200--Sobic010G265300 Sobic004G318000 Sobic004G318000 Sobic002G242200--Sobic004G318000 Sobic002G009200 Sobic002G009200 Sobic002G242200--Sobic002G009200
Octagon: transcription factors


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