Gene annotation
Transcriptome id Sobic.010G236100.4,Sobic.010G236100.9,Sobic.010G236100.1,Sobic.010G236100.5,Sobic.010G236100.3,Sobic.010G236100.6,Sobic.010G236100.8,Sobic.010G236100.7
Synonym NTMC2T1.3, ATSYTC, NTMC2TYPE1.3, Sb10g027770, SYTC, SYT3
Functional annotation C2 domain containing protein, expressed
UniProt A0A1W0VUI8 , A0A1W0VUJ5 , C5Z8A3 , A0A1W0VUF3 , A0A1W0VUH4 , A0A194YL08
Pfam PF17047 PF00168 PF00168
Panther DB PTHR10774 PTHR10774:SF62
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G04220 : Calcium-dependent lipid-binding (CaLB domain) family protein
RAP-DB (Rice) LOC_Os06g47130.1 : C2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a018170
Brachypodium KQK17230 , KQK17231 , KQK17229 , KQK17232
Barley HORVU7Hr1G101310.9 , HORVU7Hr1G101310.8 , HORVU7Hr1G101310.1 , HORVU7Hr1G101310.3 , HORVU7Hr1G101310.2 , HORVU7Hr1G101310.5 , HORVU7Hr1G101310.4 , HORVU7Hr1G101310.7 , HORVU7Hr1G101310.6 , HORVU7Hr1G101310.28 , HORVU7Hr1G101310.29 , HORVU7Hr1G101310.21 , HORVU7Hr1G101310.22 , HORVU7Hr1G101310.24 , HORVU7Hr1G101310.25 , HORVU7Hr1G101310.19 , HORVU7Hr1G101310.18 , HORVU7Hr1G101310.15 , HORVU7Hr1G101310.14 , HORVU7Hr1G101310.17 , HORVU7Hr1G101310.16 , HORVU7Hr1G101310.11 , HORVU7Hr1G101310.10 , HORVU7Hr1G101310.13 , HORVU7Hr1G101310.12 , HORVU7Hr1G101310.20 , HORVU7Hr1G101310.23 , HORVU7Hr1G101310.26 , HORVU7Hr1G101310.27 , HORVU7Hr1G101310.39 , HORVU7Hr1G101310.38 , HORVU7Hr1G101310.33 , HORVU7Hr1G101310.32 , HORVU7Hr1G101310.31 , HORVU7Hr1G101310.37 , HORVU7Hr1G101310.36 , HORVU7Hr1G101310.35 , HORVU7Hr1G101310.34 , HORVU7Hr1G101310.30
Wheat TraesCS7D02G437000 , TraesCS7D02G437000 , TraesCS7A02G447300 , TraesCS7A02G447300 , TraesCS7B02G347000 , TraesCS7B02G347000 , TraesCS7B02G347000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G063300 Fatty acid reductase 4 FAR4 (At)(PubMedID : 27208977)@male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
2 Sobic.002G318100 expressed protein -
3 Sobic.001G082600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bHelix-loop-helix transcription factor, putative, expressed -
4 Sobic.007G005700 expressed protein -
5 Sobic.004G245600 expressed protein -
6 Sobic.004G015900 expressed protein -
7 Sobic.003G079400 Ser/Thr protein kinase, putative, expressed -
8 Sobic.001G389000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@WRKY55, expressed -
9 Sobic.005G168800 DJ-1 family protein, putative, expressed K18881: D-lactate dehydratase
10 Sobic.003G316000 expressed protein -
11 Sobic.008G151300 expressed protein -
12 Sobic.002G379200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dehydrogenase, putative, expressed K00121: frmA, ADH5, S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase
13 Sobic.003G155600 exo70 exocyst complex subunit family protein, putative, expressed -
14 Sobic.001G021900 hydrolase, putative, expressed K14664: IAA-amino acid hydrolase
15 Sobic.008G158200 - -
16 Sobic.003G255200 expressed protein -
17 Sobic.001G114300 - -
18 Sobic.004G334400 ANTH, putative, expressed -
19 Sobic.005G103300 dehydrogenase, putative, expressed K18857: alcohol dehydrogenase class-P
20 Sobic.010G262200 B-box (BBX) protein(PubMedID : 30626335)@B-box zinc finger family protein, putative, expressed -


Gene co-expression network
sample Sobic010G236100 Sobic010G236100 Sobic005G063300 Sobic005G063300 Sobic010G236100--Sobic005G063300 Sobic002G318100 Sobic002G318100 Sobic010G236100--Sobic002G318100 Sobic001G082600 Sobic001G082600 Sobic010G236100--Sobic001G082600 Sobic007G005700 Sobic007G005700 Sobic010G236100--Sobic007G005700 Sobic004G245600 Sobic004G245600 Sobic010G236100--Sobic004G245600 Sobic004G015900 Sobic004G015900 Sobic010G236100--Sobic004G015900 Sobic003G079400 Sobic003G079400 Sobic010G236100--Sobic003G079400 Sobic001G389000 Sobic001G389000 Sobic010G236100--Sobic001G389000 Sobic005G168800 Sobic005G168800 Sobic010G236100--Sobic005G168800 Sobic005G063300--Sobic007G005700 Sobic003G155600 Sobic003G155600 Sobic005G063300--Sobic003G155600 Sobic003G255200 Sobic003G255200 Sobic005G063300--Sobic003G255200 Sobic010G015300 Sobic010G015300 Sobic005G063300--Sobic010G015300 Sobic008G144600 Sobic008G144600 Sobic005G063300--Sobic008G144600 Sobic001G039200 Sobic001G039200 Sobic005G063300--Sobic001G039200 Sobic005G063300--Sobic001G082600 Sobic010G092200 Sobic010G092200 Sobic005G063300--Sobic010G092200 Sobic005G063300--Sobic004G245600 Sobic002G318100--Sobic003G079400 Sobic009G187200 Sobic009G187200 Sobic002G318100--Sobic009G187200 Sobic002G318100--Sobic001G082600 Sobic003G316000 Sobic003G316000 Sobic002G318100--Sobic003G316000 Sobic008G106700 Sobic008G106700 Sobic002G318100--Sobic008G106700 Sobic004G046200 Sobic004G046200 Sobic002G318100--Sobic004G046200 Sobic006G044100 Sobic006G044100 Sobic002G318100--Sobic006G044100 Sobic002G318100--Sobic005G168800 Sobic003G016100 Sobic003G016100 Sobic002G318100--Sobic003G016100 Sobic001G082600--Sobic003G079400 Sobic001G082600--Sobic004G046200 Sobic001G082600--Sobic006G044100 Sobic003G011600 Sobic003G011600 Sobic001G082600--Sobic003G011600 Sobic001G082600--Sobic003G255200 Sobic007G215900 Sobic007G215900 Sobic001G082600--Sobic007G215900 Sobic001G082600--Sobic008G106700 Sobic004G176600 Sobic004G176600 Sobic001G082600--Sobic004G176600 Sobic009G179900 Sobic009G179900 Sobic001G082600--Sobic009G179900 Sobic007G005700--Sobic005G063300 Sobic009G139700 Sobic009G139700 Sobic007G005700--Sobic009G139700 Sobic002G125700 Sobic002G125700 Sobic007G005700--Sobic002G125700 Sobic001G449600 Sobic001G449600 Sobic007G005700--Sobic001G449600 Sobic009G217700 Sobic009G217700 Sobic007G005700--Sobic009G217700 Sobic007G005700--Sobic003G255200 Sobic007G166000 Sobic007G166000 Sobic007G005700--Sobic007G166000 Sobic005G013600 Sobic005G013600 Sobic007G005700--Sobic005G013600 Sobic007G005700--Sobic003G155600 Sobic004G245600--Sobic005G063300 Sobic001G354200 Sobic001G354200 Sobic004G245600--Sobic001G354200 Sobic004G245600--Sobic010G236100 Sobic004G245600--Sobic002G318100 Sobic002G215300 Sobic002G215300 Sobic004G245600--Sobic002G215300 Sobic006G032700 Sobic006G032700 Sobic004G245600--Sobic006G032700 Sobic001G309600 Sobic001G309600 Sobic004G245600--Sobic001G309600 Sobic001G129700 Sobic001G129700 Sobic004G245600--Sobic001G129700 Sobic003G138300 Sobic003G138300 Sobic004G245600--Sobic003G138300 Sobic007G124301 Sobic007G124301 Sobic004G015900--Sobic007G124301 Sobic002G202600 Sobic002G202600 Sobic004G015900--Sobic002G202600 Sobic008G151300 Sobic008G151300 Sobic004G015900--Sobic008G151300 Sobic004G015900--Sobic001G389000 Sobic006G046900 Sobic006G046900 Sobic004G015900--Sobic006G046900 Sobic009G181800 Sobic009G181800 Sobic004G015900--Sobic009G181800 Sobic004G015900--Sobic003G079400 Sobic009G248100 Sobic009G248100 Sobic004G015900--Sobic009G248100 Sobic003G029400 Sobic003G029400 Sobic004G015900--Sobic003G029400 Sobic003G079400--Sobic004G046200 Sobic003G079400--Sobic001G082600 Sobic006G197100 Sobic006G197100 Sobic003G079400--Sobic006G197100 Sobic002G003800 Sobic002G003800 Sobic003G079400--Sobic002G003800 Sobic004G042000 Sobic004G042000 Sobic003G079400--Sobic004G042000 Sobic003G079400--Sobic008G106700 Sobic003G079400--Sobic003G016100 Sobic004G349125 Sobic004G349125 Sobic003G079400--Sobic004G349125 Sobic003G079400--Sobic009G187200 Sobic009G159400 Sobic009G159400 Sobic001G389000--Sobic009G159400 Sobic003G037800 Sobic003G037800 Sobic001G389000--Sobic003G037800 Sobic004G101300 Sobic004G101300 Sobic001G389000--Sobic004G101300 Sobic004G340900 Sobic004G340900 Sobic001G389000--Sobic004G340900 Sobic010G259600 Sobic010G259600 Sobic001G389000--Sobic010G259600 Sobic006G092500 Sobic006G092500 Sobic001G389000--Sobic006G092500 Sobic001G139100 Sobic001G139100 Sobic001G389000--Sobic001G139100 Sobic001G038900 Sobic001G038900 Sobic001G389000--Sobic001G038900 Sobic003G429000 Sobic003G429000 Sobic001G389000--Sobic003G429000 Sobic003G416300 Sobic003G416300 Sobic005G168800--Sobic003G416300 Sobic005G168800--Sobic003G079400 Sobic005G168800--Sobic001G082600 Sobic005G168800--Sobic004G046200 Sobic005G168800--Sobic008G106700 Sobic003G050200 Sobic003G050200 Sobic005G168800--Sobic003G050200 Sobic005G168800--Sobic009G179900 Sobic005G168800--Sobic001G139100 Sobic001G325400 Sobic001G325400 Sobic005G168800--Sobic001G325400
Octagon: transcription factors


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