Gene annotation
Transcriptome id Sobic.010G237500.1
Synonym RAB-F2B, ARA-7, ATRAB5B, Sb10g027890, ATRAB-F2B, RABF2B, ATRABF2B, ARA7
Functional annotation ras-related protein, putative, expressed
UniProt A0A194YL24
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF501
NCBI CDD KOG0092; GTPase Rab5/YPT51 and related small G protein superfamily GTPases
KEGG Orthology K07889; Ras-related protein Rab-5C
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT4G19640 : Ras-related small GTP-binding family protein
RAP-DB (Rice) LOC_Os06g47260.2 : ras-related protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK17252
Barley HORVU1Hr1G013720.4 , HORVU1Hr1G013720.5 , HORVU1Hr1G013720.3 , HORVU7Hr1G101140.4 , HORVU7Hr1G101140.5 , HORVU7Hr1G101140.6 , HORVU7Hr1G101140.7 , HORVU7Hr1G101140.1 , HORVU7Hr1G101140.2 , HORVU7Hr1G101140.3 , HORVU1Hr1G013720.2
Wheat TraesCS7A02G445600 , TraesCS7A02G445600 , TraesCS7D02G433800 , TraesCS7B02G345100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G064800 histidine kinase, putative, expressed -
2 Sobic.010G059400 exostosin family protein, putative, expressed -
3 Sobic.001G055700 C-5 cytosine-specific DNA methylase, putative, expressed K00558: DNMT1, DNA (cytosine-5)-methyltransferase 1
4 Sobic.003G207400 OsFBX18 - F-box domain containing protein, expressed -
5 Sobic.007G046800 DEFL43 - Defensin and Defensin-like DEFL family, expressed -
6 Sobic.007G102600 - -
7 Sobic.005G078500 LTPL32 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
8 Sobic.004G253300 helix-loop-helix DNA-binding domain containing protein, expressed -
9 Sobic.003G285200 expressed protein -
10 Sobic.003G419000 - -
11 Sobic.008G017300 alpha-N-arabinofuranosidase, putative, expressed K01209: alpha-L-arabinofuranosidase
12 Sobic.004G076666 - -
13 Sobic.007G052201 - K10666: E3 ubiquitin-protein ligase RNF5
14 Sobic.003G351501 - -
15 Sobic.002G425400 - -
16 Sobic.002G057800 - -
17 Sobic.004G204600 protein phosphatase 2C containing protein, expressed K14803: protein phosphatase PTC2/3
18 Sobic.001G413300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
19 Sobic.003G208200 - -
20 Sobic.007G199901 - -


Gene co-expression network
sample Sobic010G237500 Sobic010G237500 Sobic010G064800 Sobic010G064800 Sobic010G237500--Sobic010G064800 Sobic010G059400 Sobic010G059400 Sobic010G237500--Sobic010G059400 Sobic001G055700 Sobic001G055700 Sobic010G237500--Sobic001G055700 Sobic003G207400 Sobic003G207400 Sobic010G237500--Sobic003G207400 Sobic007G046800 Sobic007G046800 Sobic010G237500--Sobic007G046800 Sobic007G102600 Sobic007G102600 Sobic010G237500--Sobic007G102600 Sobic005G078500 Sobic005G078500 Sobic010G237500--Sobic005G078500 Sobic004G253300 Sobic004G253300 Sobic010G237500--Sobic004G253300 Sobic003G285200 Sobic003G285200 Sobic010G237500--Sobic003G285200 Sobic010G064800--Sobic010G059400 Sobic010G064800--Sobic007G046800 Sobic006G033601 Sobic006G033601 Sobic010G064800--Sobic006G033601 Sobic010G064800--Sobic010G237500 Sobic006G087800 Sobic006G087800 Sobic010G064800--Sobic006G087800 Sobic002G314100 Sobic002G314100 Sobic010G064800--Sobic002G314100 Sobic003G388201 Sobic003G388201 Sobic010G064800--Sobic003G388201 SobicK004201 SobicK004201 Sobic010G064800--SobicK004201 Sobic004G143550 Sobic004G143550 Sobic010G064800--Sobic004G143550 Sobic010G059400--Sobic006G087800 Sobic010G059400--Sobic010G064800 Sobic010G059400--Sobic007G046800 Sobic002G057800 Sobic002G057800 Sobic010G059400--Sobic002G057800 Sobic004G285300 Sobic004G285300 Sobic010G059400--Sobic004G285300 Sobic004G015050 Sobic004G015050 Sobic010G059400--Sobic004G015050 Sobic010G121900 Sobic010G121900 Sobic010G059400--Sobic010G121900 Sobic005G189600 Sobic005G189600 Sobic010G059400--Sobic005G189600 Sobic002G080500 Sobic002G080500 Sobic010G059400--Sobic002G080500 Sobic001G055700--Sobic010G237500 Sobic003G383200 Sobic003G383200 Sobic001G055700--Sobic003G383200 Sobic005G081700 Sobic005G081700 Sobic001G055700--Sobic005G081700 Sobic009G128400 Sobic009G128400 Sobic001G055700--Sobic009G128400 Sobic001G055700--Sobic005G078500 Sobic002G403700 Sobic002G403700 Sobic001G055700--Sobic002G403700 Sobic001G095100 Sobic001G095100 Sobic001G055700--Sobic001G095100 Sobic004G076666 Sobic004G076666 Sobic001G055700--Sobic004G076666 Sobic009G211300 Sobic009G211300 Sobic001G055700--Sobic009G211300 Sobic002G400700 Sobic002G400700 Sobic003G207400--Sobic002G400700 Sobic003G436100 Sobic003G436100 Sobic003G207400--Sobic003G436100 Sobic006G200650 Sobic006G200650 Sobic003G207400--Sobic006G200650 Sobic002G142400 Sobic002G142400 Sobic003G207400--Sobic002G142400 Sobic003G059450 Sobic003G059450 Sobic003G207400--Sobic003G059450 Sobic009G188200 Sobic009G188200 Sobic003G207400--Sobic009G188200 Sobic003G031300 Sobic003G031300 Sobic003G207400--Sobic003G031300 Sobic003G105200 Sobic003G105200 Sobic003G207400--Sobic003G105200 Sobic002G334700 Sobic002G334700 Sobic003G207400--Sobic002G334700 Sobic007G046800--Sobic002G057800 Sobic007G046800--Sobic010G064800 Sobic007G046800--Sobic010G059400 Sobic005G097201 Sobic005G097201 Sobic007G046800--Sobic005G097201 Sobic007G046800--Sobic005G189600 Sobic007G046800--Sobic004G015050 Sobic004G015150 Sobic004G015150 Sobic007G046800--Sobic004G015150 Sobic007G046800--Sobic004G285300 Sobic007G046800--Sobic002G080500 Sobic004G274300 Sobic004G274300 Sobic007G102600--Sobic004G274300 Sobic010G039150 Sobic010G039150 Sobic007G102600--Sobic010G039150 Sobic001G323101 Sobic001G323101 Sobic007G102600--Sobic001G323101 Sobic009G079600 Sobic009G079600 Sobic007G102600--Sobic009G079600 Sobic001G249800 Sobic001G249800 Sobic007G102600--Sobic001G249800 Sobic001G340100 Sobic001G340100 Sobic007G102600--Sobic001G340100 Sobic002G118000 Sobic002G118000 Sobic007G102600--Sobic002G118000 Sobic004G134400 Sobic004G134400 Sobic007G102600--Sobic004G134400 Sobic007G127200 Sobic007G127200 Sobic007G102600--Sobic007G127200 Sobic004G309200 Sobic004G309200 Sobic005G078500--Sobic004G309200 Sobic006G194900 Sobic006G194900 Sobic005G078500--Sobic006G194900 Sobic006G189500 Sobic006G189500 Sobic005G078500--Sobic006G189500 Sobic004G029500 Sobic004G029500 Sobic005G078500--Sobic004G029500 Sobic002G095000 Sobic002G095000 Sobic005G078500--Sobic002G095000 Sobic010G191400 Sobic010G191400 Sobic005G078500--Sobic010G191400 Sobic002G058100 Sobic002G058100 Sobic005G078500--Sobic002G058100 Sobic010G129300 Sobic010G129300 Sobic005G078500--Sobic010G129300 Sobic005G081800 Sobic005G081800 Sobic005G078500--Sobic005G081800 Sobic001G059001 Sobic001G059001 Sobic004G253300--Sobic001G059001 Sobic005G137500 Sobic005G137500 Sobic004G253300--Sobic005G137500 Sobic009G064300 Sobic009G064300 Sobic004G253300--Sobic009G064300 Sobic002G012100 Sobic002G012100 Sobic004G253300--Sobic002G012100 Sobic003G312600 Sobic003G312600 Sobic004G253300--Sobic003G312600 Sobic006G172100 Sobic006G172100 Sobic004G253300--Sobic006G172100 Sobic003G338600 Sobic003G338600 Sobic004G253300--Sobic003G338600 Sobic002G181500 Sobic002G181500 Sobic004G253300--Sobic002G181500 Sobic004G206600 Sobic004G206600 Sobic004G253300--Sobic004G206600 Sobic006G020700 Sobic006G020700 Sobic003G285200--Sobic006G020700 Sobic010G191450 Sobic010G191450 Sobic003G285200--Sobic010G191450 Sobic006G022900 Sobic006G022900 Sobic003G285200--Sobic006G022900 Sobic008G181600 Sobic008G181600 Sobic003G285200--Sobic008G181600 Sobic004G221600 Sobic004G221600 Sobic003G285200--Sobic004G221600 Sobic009G019900 Sobic009G019900 Sobic003G285200--Sobic009G019900 Sobic001G345600 Sobic001G345600 Sobic003G285200--Sobic001G345600 Sobic006G194800 Sobic006G194800 Sobic003G285200--Sobic006G194800 Sobic001G312200 Sobic001G312200 Sobic003G285200--Sobic001G312200
Octagon: transcription factors


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