Gene annotation
Transcriptome id Sobic.001G055700.1
Synonym
Functional annotation C-5 cytosine-specific DNA methylase, putative, expressed
UniProt C5WX58
Pfam PF01426 PF00145 PF12047
Panther DB PTHR10629 PTHR10629:SF36
NCBI CDD -
KEGG Orthology K00558; DNMT1, DNA (cytosine-5)-methyltransferase 1
Gene Ontology GO:0003682; chromatin binding


Orthologs (automatic annotation)
TAIR AT5G49160 : methyltransferase 1
RAP-DB (Rice) LOC_Os03g58400.1 : C-5 cytosine-specific DNA methylase, putative, expressed
MaizeGDB (Corn) Zm00025a045197 , Zm00025a045196
Brachypodium KQK12690 , KQK20551 , KQK20553 , KQK20552
Barley HORVU0Hr1G039040.10 , HORVU0Hr1G039040.11 , HORVU0Hr1G039040.12 , HORVU7Hr1G117100.20 , HORVU5Hr1G106530.2 , HORVU5Hr1G106530.1 , HORVU0Hr1G039040.6 , HORVU0Hr1G039040.7 , HORVU0Hr1G039040.4 , HORVU0Hr1G039040.2 , HORVU0Hr1G039040.3 , HORVU0Hr1G039040.1 , HORVU0Hr1G039040.8 , HORVU0Hr1G039040.9 , HORVU7Hr1G117100.9 , HORVU7Hr1G117100.8 , HORVU7Hr1G117100.3 , HORVU7Hr1G117100.2 , HORVU7Hr1G117100.1 , HORVU7Hr1G117100.7 , HORVU7Hr1G117100.6 , HORVU7Hr1G117100.5 , HORVU7Hr1G117100.4 , HORVU7Hr1G117100.19 , HORVU7Hr1G117100.18 , HORVU7Hr1G117100.13 , HORVU7Hr1G117100.12 , HORVU7Hr1G117100.11 , HORVU7Hr1G117100.10 , HORVU7Hr1G117100.17 , HORVU7Hr1G117100.16 , HORVU7Hr1G117100.15 , HORVU7Hr1G117100.14
Wheat TraesCS5A02G443200 , TraesCS7D02G519000 , TraesCS5B02G447800 , TraesCS5B02G447800 , TraesCS2A02G235900 , TraesCS7B02G448900 , TraesCS2B02G260800 , TraesCS2B02G260800 , TraesCS7A02G531500 , TraesCS5D02G450700 , TraesCS2D02G241800
Populus PNS94277 , PNS94276 , PNS23678 , PNT41050 , PNT41051


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G237500 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C
2 Sobic.003G383200 expressed protein -
3 Sobic.005G081700 DEFL33 - Defensin and Defensin-like DEFL family, expressed -
4 Sobic.009G128400 peptide-N4-asparagine amidase A, putative, expressed -
5 Sobic.005G078500 LTPL32 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
6 Sobic.002G403700 condensin complex subunit 1, putative, expressed K06677: YCS4, CNAP1, condensin complex subunit 1
7 Sobic.001G095100 response regulator receiver domain containing protein, expressed -
8 Sobic.004G076666 - -
9 Sobic.009G211300 MATH domain containing protein, expressed -
10 Sobic.004G073800 STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed -
11 Sobic.007G164101 - -
12 Sobic.004G253300 helix-loop-helix DNA-binding domain containing protein, expressed -
13 Sobic.001G059150 - -
14 Sobic.002G104600 Ser/Thr protein phosphatase family protein, putative, expressed -
15 Sobic.010G064800 histidine kinase, putative, expressed -
16 Sobic.009G171900 - -
17 Sobic.006G005550 - -
18 Sobic.004G204600 protein phosphatase 2C containing protein, expressed K14803: protein phosphatase PTC2/3
19 Sobic.003G300000 expressed protein -
20 Sobic.003G055400 expressed protein -


Gene co-expression network
sample Sobic001G055700 Sobic001G055700 Sobic010G237500 Sobic010G237500 Sobic001G055700--Sobic010G237500 Sobic003G383200 Sobic003G383200 Sobic001G055700--Sobic003G383200 Sobic005G081700 Sobic005G081700 Sobic001G055700--Sobic005G081700 Sobic009G128400 Sobic009G128400 Sobic001G055700--Sobic009G128400 Sobic005G078500 Sobic005G078500 Sobic001G055700--Sobic005G078500 Sobic002G403700 Sobic002G403700 Sobic001G055700--Sobic002G403700 Sobic001G095100 Sobic001G095100 Sobic001G055700--Sobic001G095100 Sobic004G076666 Sobic004G076666 Sobic001G055700--Sobic004G076666 Sobic009G211300 Sobic009G211300 Sobic001G055700--Sobic009G211300 Sobic010G064800 Sobic010G064800 Sobic010G237500--Sobic010G064800 Sobic010G059400 Sobic010G059400 Sobic010G237500--Sobic010G059400 Sobic010G237500--Sobic001G055700 Sobic003G207400 Sobic003G207400 Sobic010G237500--Sobic003G207400 Sobic007G046800 Sobic007G046800 Sobic010G237500--Sobic007G046800 Sobic007G102600 Sobic007G102600 Sobic010G237500--Sobic007G102600 Sobic010G237500--Sobic005G078500 Sobic004G253300 Sobic004G253300 Sobic010G237500--Sobic004G253300 Sobic003G285200 Sobic003G285200 Sobic010G237500--Sobic003G285200 Sobic005G057201 Sobic005G057201 Sobic003G383200--Sobic005G057201 Sobic001G059150 Sobic001G059150 Sobic003G383200--Sobic001G059150 Sobic003G200400 Sobic003G200400 Sobic003G383200--Sobic003G200400 Sobic003G159300 Sobic003G159300 Sobic003G383200--Sobic003G159300 Sobic006G145650 Sobic006G145650 Sobic003G383200--Sobic006G145650 Sobic004G013900 Sobic004G013900 Sobic003G383200--Sobic004G013900 Sobic001G234733 Sobic001G234733 Sobic003G383200--Sobic001G234733 Sobic005G008400 Sobic005G008400 Sobic003G383200--Sobic005G008400 Sobic010G214950 Sobic010G214950 Sobic003G383200--Sobic010G214950 Sobic007G080660 Sobic007G080660 Sobic005G081700--Sobic007G080660 Sobic001G317900 Sobic001G317900 Sobic005G081700--Sobic001G317900 Sobic005G083932 Sobic005G083932 Sobic005G081700--Sobic005G083932 Sobic008G174400 Sobic008G174400 Sobic005G081700--Sobic008G174400 Sobic002G191200 Sobic002G191200 Sobic005G081700--Sobic002G191200 Sobic002G373500 Sobic002G373500 Sobic005G081700--Sobic002G373500 Sobic004G073800 Sobic004G073800 Sobic009G128400--Sobic004G073800 Sobic001G454700 Sobic001G454700 Sobic009G128400--Sobic001G454700 Sobic009G218700 Sobic009G218700 Sobic009G128400--Sobic009G218700 Sobic002G337400 Sobic002G337400 Sobic009G128400--Sobic002G337400 Sobic003G351501 Sobic003G351501 Sobic009G128400--Sobic003G351501 Sobic001G524150 Sobic001G524150 Sobic009G128400--Sobic001G524150 Sobic004G129400 Sobic004G129400 Sobic009G128400--Sobic004G129400 Sobic010G196900 Sobic010G196900 Sobic009G128400--Sobic010G196900 Sobic009G058900 Sobic009G058900 Sobic009G128400--Sobic009G058900 Sobic004G309200 Sobic004G309200 Sobic005G078500--Sobic004G309200 Sobic006G194900 Sobic006G194900 Sobic005G078500--Sobic006G194900 Sobic006G189500 Sobic006G189500 Sobic005G078500--Sobic006G189500 Sobic004G029500 Sobic004G029500 Sobic005G078500--Sobic004G029500 Sobic002G095000 Sobic002G095000 Sobic005G078500--Sobic002G095000 Sobic010G191400 Sobic010G191400 Sobic005G078500--Sobic010G191400 Sobic002G058100 Sobic002G058100 Sobic005G078500--Sobic002G058100 Sobic010G129300 Sobic010G129300 Sobic005G078500--Sobic010G129300 Sobic005G081800 Sobic005G081800 Sobic005G078500--Sobic005G081800 Sobic003G055400 Sobic003G055400 Sobic002G403700--Sobic003G055400 Sobic002G104600 Sobic002G104600 Sobic002G403700--Sobic002G104600 Sobic006G063800 Sobic006G063800 Sobic002G403700--Sobic006G063800 Sobic003G409500 Sobic003G409500 Sobic002G403700--Sobic003G409500 Sobic006G108500 Sobic006G108500 Sobic002G403700--Sobic006G108500 Sobic005G100500 Sobic005G100500 Sobic002G403700--Sobic005G100500 Sobic002G403700--Sobic001G454700 Sobic001G105000 Sobic001G105000 Sobic002G403700--Sobic001G105000 Sobic001G518050 Sobic001G518050 Sobic002G403700--Sobic001G518050 Sobic007G070100 Sobic007G070100 Sobic001G095100--Sobic007G070100 Sobic004G054600 Sobic004G054600 Sobic001G095100--Sobic004G054600 Sobic004G024500 Sobic004G024500 Sobic001G095100--Sobic004G024500 Sobic001G095100--Sobic001G454700 Sobic001G095100--Sobic009G128400 Sobic007G107800 Sobic007G107800 Sobic001G095100--Sobic007G107800 Sobic006G244200 Sobic006G244200 Sobic001G095100--Sobic006G244200 Sobic001G332933 Sobic001G332933 Sobic001G095100--Sobic001G332933 Sobic003G224900 Sobic003G224900 Sobic001G095100--Sobic003G224900 Sobic002G370150 Sobic002G370150 Sobic004G076666--Sobic002G370150 Sobic008G108700 Sobic008G108700 Sobic004G076666--Sobic008G108700 Sobic010G280000 Sobic010G280000 Sobic004G076666--Sobic010G280000 Sobic004G076666--Sobic005G081700 Sobic005G110529 Sobic005G110529 Sobic004G076666--Sobic005G110529 Sobic001G261428 Sobic001G261428 Sobic004G076666--Sobic001G261428 Sobic008G093101 Sobic008G093101 Sobic004G076666--Sobic008G093101 Sobic003G372850 Sobic003G372850 Sobic004G076666--Sobic003G372850 Sobic004G076666--Sobic010G237500 Sobic003G063700 Sobic003G063700 Sobic009G211300--Sobic003G063700 Sobic001G158100 Sobic001G158100 Sobic009G211300--Sobic001G158100 Sobic006G134700 Sobic006G134700 Sobic009G211300--Sobic006G134700 Sobic001G235200 Sobic001G235200 Sobic009G211300--Sobic001G235200 Sobic001G216400 Sobic001G216400 Sobic009G211300--Sobic001G216400 Sobic009G063700 Sobic009G063700 Sobic009G211300--Sobic009G063700 Sobic009G075500 Sobic009G075500 Sobic009G211300--Sobic009G075500 Sobic006G213900 Sobic006G213900 Sobic009G211300--Sobic006G213900 Sobic004G056000 Sobic004G056000 Sobic009G211300--Sobic004G056000
Octagon: transcription factors


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