Gene annotation
Transcriptome id Sobic.001G022800.1
Synonym Sb01g002170, ACT7
Functional annotation actin, putative, expressed
UniProt C5WTY3
Pfam PF00022
Panther DB PTHR11937 PTHR11937:SF254
NCBI CDD -
KEGG Orthology K10355; actin, other eukaryote
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G09810 : actin 7
RAP-DB (Rice) LOC_Os03g61970.1 : actin, putative, expressed
MaizeGDB (Corn) Zm00025a017441 , Zm00025a006353 , Zm00025a040979 , Zm00025a008940 , Zm00025a039570 , Zm00025a012921 , Zm00025a007893 , Zm00025a034168 , Zm00025a038281 , Zm00025a038282 , Zm00025a037260
Brachypodium KQK12272 , KQJ92134 , KQK08099
Barley HORVU5Hr1G039850.4 , HORVU5Hr1G039850.8 , HORVU5Hr1G039850.1 , HORVU5Hr1G039850.2 , HORVU5Hr1G039850.3 , HORVU5Hr1G039850.5 , HORVU5Hr1G039850.6 , HORVU5Hr1G039850.7 , HORVU5Hr1G117900.5 , HORVU5Hr1G117900.4 , HORVU5Hr1G117900.1 , HORVU5Hr1G117900.3 , HORVU5Hr1G117900.2
Wheat TraesCS5B02G124100 , TraesCS4A02G356100 , TraesCS4A02G356100 , TraesCS5D02G516200 , TraesCS5A02G124300 , TraesCS5A02G124300 , TraesCS1D02G020000 , TraesCS5D02G132200 , TraesCS1B02G024500 , TraesCS5B02G516100
Populus PNT17720


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cDNA sequences
Sobic.001G022800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
2 Sobic.004G275700 adaptor complexes medium subunit family domain containing protein, expressed K11826: AP-2 complex subunit mu-1
3 Sobic.004G132300 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
4 Sobic.009G249100 CPuORF17 - conserved peptide uORF-containing transcript, expressed -
5 Sobic.003G261400 DUF292 domain containing protein, expressed -
6 Sobic.001G109300 adenylyl cyclase-associated protein, putative, expressed K17261: CAP1_2, adenylyl cyclase-associated protein
7 Sobic.007G136100 uncharacterized protein family UPF0016 domain containing protein, expressed -
8 Sobic.002G226900 zinc-binding alcohol dehydrogenase domain-containing protein 2, putative, expressed K07119: PTGR3, prostaglandin reductase 3
9 Sobic.009G005900 actin, putative, expressed K10355: actin, other eukaryote
10 Sobic.004G130900 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
11 Sobic.010G000900 spotted leaf 11, putative, expressed -
12 Sobic.009G257600 - K12812: DDX39B, UAP56, ATP-dependent RNA helicase UAP56/SUB2
13 Sobic.001G206900 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein
14 Sobic.007G079300 proteasome/cyclosome repeat containing protein, expressed K03032: PSMD1, 26S proteasome regulatory subunit N2
15 Sobic.004G181900 expressed protein -
16 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
17 Sobic.009G075800 serine/threonine protein phosphatase 5, putative, expressed K04460: serine/threonine-protein phosphatase 5
18 Sobic.006G249700 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
19 Sobic.001G323000 UBX domain-containing protein, putative, expressed K18726: FAF2, FAS-associated factor 2
20 Sobic.002G393500 expressed protein -


Gene co-expression network
sample Sobic001G022800 Sobic001G022800 Sobic001G283200 Sobic001G283200 Sobic001G022800--Sobic001G283200 Sobic004G275700 Sobic004G275700 Sobic001G022800--Sobic004G275700 Sobic004G132300 Sobic004G132300 Sobic001G022800--Sobic004G132300 Sobic009G249100 Sobic009G249100 Sobic001G022800--Sobic009G249100 Sobic003G261400 Sobic003G261400 Sobic001G022800--Sobic003G261400 Sobic001G109300 Sobic001G109300 Sobic001G022800--Sobic001G109300 Sobic007G136100 Sobic007G136100 Sobic001G022800--Sobic007G136100 Sobic002G226900 Sobic002G226900 Sobic001G022800--Sobic002G226900 Sobic009G005900 Sobic009G005900 Sobic001G022800--Sobic009G005900 Sobic001G458700 Sobic001G458700 Sobic001G283200--Sobic001G458700 Sobic001G283200--Sobic003G261400 Sobic006G252200 Sobic006G252200 Sobic001G283200--Sobic006G252200 Sobic001G033500 Sobic001G033500 Sobic001G283200--Sobic001G033500 Sobic004G348900 Sobic004G348900 Sobic001G283200--Sobic004G348900 Sobic004G181900 Sobic004G181900 Sobic001G283200--Sobic004G181900 Sobic003G349300 Sobic003G349300 Sobic001G283200--Sobic003G349300 Sobic007G176200 Sobic007G176200 Sobic001G283200--Sobic007G176200 Sobic004G082900 Sobic004G082900 Sobic001G283200--Sobic004G082900 Sobic001G199100 Sobic001G199100 Sobic004G275700--Sobic001G199100 Sobic001G091300 Sobic001G091300 Sobic004G275700--Sobic001G091300 Sobic009G075800 Sobic009G075800 Sobic004G275700--Sobic009G075800 Sobic002G262900 Sobic002G262900 Sobic004G275700--Sobic002G262900 Sobic001G007000 Sobic001G007000 Sobic004G275700--Sobic001G007000 Sobic010G020400 Sobic010G020400 Sobic004G275700--Sobic010G020400 Sobic002G008800 Sobic002G008800 Sobic004G275700--Sobic002G008800 Sobic003G365300 Sobic003G365300 Sobic004G275700--Sobic003G365300 Sobic003G012200 Sobic003G012200 Sobic004G275700--Sobic003G012200 Sobic004G132300--Sobic001G283200 Sobic004G132300--Sobic001G033500 Sobic006G217700 Sobic006G217700 Sobic004G132300--Sobic006G217700 Sobic001G206900 Sobic001G206900 Sobic004G132300--Sobic001G206900 Sobic006G148200 Sobic006G148200 Sobic004G132300--Sobic006G148200 Sobic001G237500 Sobic001G237500 Sobic004G132300--Sobic001G237500 Sobic002G294200 Sobic002G294200 Sobic004G132300--Sobic002G294200 Sobic004G274400 Sobic004G274400 Sobic004G132300--Sobic004G274400 Sobic006G034000 Sobic006G034000 Sobic004G132300--Sobic006G034000 Sobic002G071000 Sobic002G071000 Sobic009G249100--Sobic002G071000 Sobic009G249100--Sobic001G283200 Sobic009G249100--Sobic001G458700 Sobic007G079300 Sobic007G079300 Sobic009G249100--Sobic007G079300 Sobic009G249100--Sobic001G022800 Sobic008G004400 Sobic008G004400 Sobic009G249100--Sobic008G004400 Sobic001G078800 Sobic001G078800 Sobic009G249100--Sobic001G078800 Sobic009G249100--Sobic004G082900 Sobic001G085100 Sobic001G085100 Sobic009G249100--Sobic001G085100 Sobic003G261400--Sobic001G283200 Sobic002G281300 Sobic002G281300 Sobic003G261400--Sobic002G281300 Sobic003G261500 Sobic003G261500 Sobic003G261400--Sobic003G261500 Sobic007G045600 Sobic007G045600 Sobic003G261400--Sobic007G045600 Sobic003G261400--Sobic001G458700 Sobic004G130900 Sobic004G130900 Sobic003G261400--Sobic004G130900 Sobic003G124800 Sobic003G124800 Sobic003G261400--Sobic003G124800 Sobic001G051200 Sobic001G051200 Sobic003G261400--Sobic001G051200 Sobic010G000900 Sobic010G000900 Sobic003G261400--Sobic010G000900 Sobic001G109300--Sobic007G176200 Sobic009G139800 Sobic009G139800 Sobic001G109300--Sobic009G139800 Sobic001G109300--Sobic006G252200 Sobic001G010700 Sobic001G010700 Sobic001G109300--Sobic001G010700 Sobic003G428200 Sobic003G428200 Sobic001G109300--Sobic003G428200 Sobic003G330500 Sobic003G330500 Sobic001G109300--Sobic003G330500 Sobic001G281900 Sobic001G281900 Sobic001G109300--Sobic001G281900 Sobic001G109300--Sobic001G458700 Sobic009G067000 Sobic009G067000 Sobic001G109300--Sobic009G067000 Sobic007G136100--Sobic001G283200 Sobic010G193900 Sobic010G193900 Sobic007G136100--Sobic010G193900 Sobic003G055700 Sobic003G055700 Sobic007G136100--Sobic003G055700 Sobic007G136100--Sobic003G261400 Sobic003G372000 Sobic003G372000 Sobic007G136100--Sobic003G372000 Sobic004G081800 Sobic004G081800 Sobic007G136100--Sobic004G081800 Sobic007G136100--Sobic003G261500 Sobic006G176600 Sobic006G176600 Sobic007G136100--Sobic006G176600 Sobic001G049200 Sobic001G049200 Sobic007G136100--Sobic001G049200 Sobic002G226900--Sobic009G075800 Sobic002G226900--Sobic004G275700 Sobic002G226900--Sobic003G012200 Sobic002G226900--Sobic001G199100 Sobic009G217100 Sobic009G217100 Sobic002G226900--Sobic009G217100 Sobic002G226900--Sobic003G365300 Sobic010G251000 Sobic010G251000 Sobic002G226900--Sobic010G251000 Sobic002G226900--Sobic010G000900 Sobic001G203900 Sobic001G203900 Sobic002G226900--Sobic001G203900 Sobic009G174900 Sobic009G174900 Sobic009G005900--Sobic009G174900 Sobic009G135600 Sobic009G135600 Sobic009G005900--Sobic009G135600 Sobic004G321900 Sobic004G321900 Sobic009G005900--Sobic004G321900 Sobic001G433400 Sobic001G433400 Sobic009G005900--Sobic001G433400 Sobic002G400000 Sobic002G400000 Sobic009G005900--Sobic002G400000 Sobic002G134001 Sobic002G134001 Sobic009G005900--Sobic002G134001 Sobic001G461900 Sobic001G461900 Sobic009G005900--Sobic001G461900 Sobic003G010400 Sobic003G010400 Sobic009G005900--Sobic003G010400 Sobic006G212100 Sobic006G212100 Sobic009G005900--Sobic006G212100
Octagon: transcription factors


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