Gene annotation
Transcriptome id Sobic.001G028200.1
Synonym emb1507
Functional annotation U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed
UniProt A0A1B6QH23
Pfam PF00271 PF00270 PF02889
Panther DB PTHR24075
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding GO:0008565obsolete protein transporter activity


Orthologs (automatic annotation)
TAIR AT1G20960 : U5 small nuclear ribonucleoprotein helicase, putative
RAP-DB (Rice) LOC_Os02g01740.1 : U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed
MaizeGDB (Corn) Zm00025a048927
Brachypodium KQK18752 , KQJ92834
Barley HORVU6Hr1G004350.6 , HORVU6Hr1G004350.7 , HORVU6Hr1G004350.1 , HORVU6Hr1G004350.2 , HORVU6Hr1G004350.3 , HORVU6Hr1G004350.8 , HORVU7Hr1G040480.5 , HORVU7Hr1G040480.4 , HORVU7Hr1G040480.7 , HORVU7Hr1G040480.6 , HORVU7Hr1G040480.1 , HORVU7Hr1G040480.3 , HORVU7Hr1G040480.2 , HORVU7Hr1G040480.9 , HORVU7Hr1G040480.8
Wheat TraesCS7D02G199800 , TraesCS6A02G024900 , TraesCS6B02G034100 , TraesCS7A02G238700 , TraesCS6D02G028200 , TraesCS7B02G103700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G126500 - -
2 Sobic.005G103100 AP2 domain containing protein, expressed K14516: ethylene-responsive transcription factor 1
3 Sobic.009G111800 OsFBO5 - F-box and other domain containing protein, expressed -
4 Sobic.003G089700 - -
5 Sobic.004G109100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed -
6 Sobic.002G025000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@receptor like protein kinase, putative, expressed -
7 Sobic.002G130200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
8 Sobic.007G149750 - -
9 Sobic.003G401500 expressed protein -
10 Sobic.008G024900 expressed protein -
11 Sobic.008G081500 peptide transporter PTR3-A, putative, expressed -
12 Sobic.001G249900 - -
13 Sobic.001G071200 - -
14 Sobic.007G123700 zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.003G255800 expressed protein -
16 Sobic.005G008101 - -
17 Sobic.001G176700 CBS domain containing protein, expressed -
18 Sobic.007G118400 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
19 Sobic.003G288500 - -
20 Sobic.006G093550 - -


Gene co-expression network
sample Sobic001G028200 Sobic001G028200 Sobic001G126500 Sobic001G126500 Sobic001G028200--Sobic001G126500 Sobic005G103100 Sobic005G103100 Sobic001G028200--Sobic005G103100 Sobic009G111800 Sobic009G111800 Sobic001G028200--Sobic009G111800 Sobic003G089700 Sobic003G089700 Sobic001G028200--Sobic003G089700 Sobic004G109100 Sobic004G109100 Sobic001G028200--Sobic004G109100 Sobic002G025000 Sobic002G025000 Sobic001G028200--Sobic002G025000 Sobic002G130200 Sobic002G130200 Sobic001G028200--Sobic002G130200 Sobic007G149750 Sobic007G149750 Sobic001G028200--Sobic007G149750 Sobic003G401500 Sobic003G401500 Sobic001G028200--Sobic003G401500 Sobic008G094150 Sobic008G094150 Sobic001G126500--Sobic008G094150 Sobic001G126500--Sobic001G028200 Sobic001G193800 Sobic001G193800 Sobic001G126500--Sobic001G193800 Sobic004G208301 Sobic004G208301 Sobic001G126500--Sobic004G208301 Sobic001G176700 Sobic001G176700 Sobic001G126500--Sobic001G176700 Sobic010G162200 Sobic010G162200 Sobic001G126500--Sobic010G162200 Sobic004G319400 Sobic004G319400 Sobic001G126500--Sobic004G319400 Sobic006G205000 Sobic006G205000 Sobic001G126500--Sobic006G205000 Sobic005G214150 Sobic005G214150 Sobic001G126500--Sobic005G214150 Sobic010G057800 Sobic010G057800 Sobic005G103100--Sobic010G057800 Sobic007G089400 Sobic007G089400 Sobic005G103100--Sobic007G089400 Sobic009G164800 Sobic009G164800 Sobic005G103100--Sobic009G164800 Sobic003G255800 Sobic003G255800 Sobic005G103100--Sobic003G255800 Sobic001G102400 Sobic001G102400 Sobic005G103100--Sobic001G102400 Sobic004G111400 Sobic004G111400 Sobic005G103100--Sobic004G111400 Sobic005G103100--Sobic001G028200 Sobic010G033900 Sobic010G033900 Sobic005G103100--Sobic010G033900 Sobic010G278900 Sobic010G278900 Sobic005G103100--Sobic010G278900 Sobic009G111800--Sobic002G025000 Sobic009G111800--Sobic004G109100 Sobic004G106200 Sobic004G106200 Sobic009G111800--Sobic004G106200 Sobic001G321700 Sobic001G321700 Sobic009G111800--Sobic001G321700 Sobic005G008101 Sobic005G008101 Sobic009G111800--Sobic005G008101 Sobic009G111800--Sobic007G149750 Sobic010G091100 Sobic010G091100 Sobic009G111800--Sobic010G091100 Sobic003G325000 Sobic003G325000 Sobic009G111800--Sobic003G325000 Sobic004G138400 Sobic004G138400 Sobic009G111800--Sobic004G138400 Sobic008G157700 Sobic008G157700 Sobic003G089700--Sobic008G157700 Sobic001G365332 Sobic001G365332 Sobic003G089700--Sobic001G365332 Sobic006G017266 Sobic006G017266 Sobic003G089700--Sobic006G017266 Sobic003G128575 Sobic003G128575 Sobic003G089700--Sobic003G128575 Sobic005G183450 Sobic005G183450 Sobic003G089700--Sobic005G183450 Sobic006G124850 Sobic006G124850 Sobic003G089700--Sobic006G124850 Sobic006G020350 Sobic006G020350 Sobic003G089700--Sobic006G020350 Sobic003G089700--Sobic005G008101 Sobic005G093600 Sobic005G093600 Sobic003G089700--Sobic005G093600 Sobic004G109100--Sobic004G106200 Sobic004G109100--Sobic009G111800 Sobic010G046900 Sobic010G046900 Sobic004G109100--Sobic010G046900 Sobic004G109100--Sobic001G321700 Sobic004G109100--Sobic002G130200 Sobic005G060400 Sobic005G060400 Sobic004G109100--Sobic005G060400 Sobic004G109100--Sobic003G325000 Sobic004G109100--Sobic004G138400 Sobic004G109100--Sobic005G008101 Sobic002G025000--Sobic007G149750 Sobic002G322101 Sobic002G322101 Sobic002G025000--Sobic002G322101 Sobic004G234766 Sobic004G234766 Sobic002G025000--Sobic004G234766 Sobic010G173600 Sobic010G173600 Sobic002G025000--Sobic010G173600 Sobic006G093550 Sobic006G093550 Sobic002G025000--Sobic006G093550 Sobic003G169400 Sobic003G169400 Sobic002G025000--Sobic003G169400 Sobic001G249900 Sobic001G249900 Sobic002G025000--Sobic001G249900 Sobic006G147350 Sobic006G147350 Sobic002G025000--Sobic006G147350 Sobic003G255850 Sobic003G255850 Sobic002G025000--Sobic003G255850 Sobic004G251400 Sobic004G251400 Sobic002G130200--Sobic004G251400 Sobic004G337600 Sobic004G337600 Sobic002G130200--Sobic004G337600 Sobic003G168500 Sobic003G168500 Sobic002G130200--Sobic003G168500 Sobic003G172900 Sobic003G172900 Sobic002G130200--Sobic003G172900 Sobic002G044500 Sobic002G044500 Sobic002G130200--Sobic002G044500 Sobic008G160300 Sobic008G160300 Sobic002G130200--Sobic008G160300 Sobic003G171900 Sobic003G171900 Sobic002G130200--Sobic003G171900 Sobic003G172850 Sobic003G172850 Sobic002G130200--Sobic003G172850 Sobic003G172400 Sobic003G172400 Sobic002G130200--Sobic003G172400 Sobic007G149750--Sobic002G322101 Sobic007G149750--Sobic010G173600 Sobic007G149750--Sobic006G147350 Sobic007G149750--Sobic006G093550 Sobic007G149750--Sobic003G255850 Sobic007G149750--Sobic001G249900 Sobic007G149750--Sobic004G234766 Sobic007G149750--Sobic005G093600 Sobic007G149750--Sobic003G128575 Sobic001G330925 Sobic001G330925 Sobic003G401500--Sobic001G330925 Sobic009G173800 Sobic009G173800 Sobic003G401500--Sobic009G173800 Sobic002G064200 Sobic002G064200 Sobic003G401500--Sobic002G064200 Sobic001G448800 Sobic001G448800 Sobic003G401500--Sobic001G448800 Sobic009G233900 Sobic009G233900 Sobic003G401500--Sobic009G233900 Sobic004G179500 Sobic004G179500 Sobic003G401500--Sobic004G179500 Sobic003G401500--Sobic004G138400 Sobic009G115500 Sobic009G115500 Sobic003G401500--Sobic009G115500 Sobic009G082800 Sobic009G082800 Sobic003G401500--Sobic009G082800
Octagon: transcription factors


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