Gene annotation
Transcriptome id Sobic.001G038601.1
Synonym -
Functional annotation -
UniProt A0A1Z5S477
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os12g37380.1 : RNA pseudouridine synthase, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G117500 sterol 3-beta-glucosyltransferase, putative, expressed K05841: sterol 3beta-glucosyltransferase
2 Sobic.002G124600 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
3 Sobic.008G166400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NBS-LRR disease resistance protein, putative, expressed -
4 Sobic.007G095300 cbbY protein-related, putative, expressed -
5 Sobic.002G097700 expressed protein -
6 Sobic.010G153201 - -
7 Sobic.003G203300 stress regulated protein, putative, expressed -
8 Sobic.003G409000 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR3 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
9 Sobic.005G118400 expressed protein -
10 Sobic.006G186500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@C4-dicarboxylate transporter/malic acid transport protein domain containing protein, expressed -
11 Sobic.004G179400 ferrochelatase 2(PubMedID : 26465154)@ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
12 Sobic.003G146500 red chlorophyll catabolite reductase, putative, expressed K13545: RCCR, red chlorophyll catabolite reductase
13 Sobic.002G056500 with no lysine (K) kinase 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_PAK_Ste20_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
14 Sobic.003G220100 - -
15 Sobic.006G065100 ERD1 protein, chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
16 Sobic.001G498700 OsFBO11 - F-box and other domain containing protein, expressed -
17 Sobic.004G181600 calmodulin binding protein, putative, expressed -
18 Sobic.007G090403 - -
19 Sobic.005G068700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD kinase, putative, expressed K00858: ppnK, NAD+ kinase
20 Sobic.001G530900 expressed protein -


Gene co-expression network
sample Sobic001G038601 Sobic001G038601 Sobic002G117500 Sobic002G117500 Sobic001G038601--Sobic002G117500 Sobic002G124600 Sobic002G124600 Sobic001G038601--Sobic002G124600 Sobic008G166400 Sobic008G166400 Sobic001G038601--Sobic008G166400 Sobic007G095300 Sobic007G095300 Sobic001G038601--Sobic007G095300 Sobic002G097700 Sobic002G097700 Sobic001G038601--Sobic002G097700 Sobic010G153201 Sobic010G153201 Sobic001G038601--Sobic010G153201 Sobic003G203300 Sobic003G203300 Sobic001G038601--Sobic003G203300 Sobic003G409000 Sobic003G409000 Sobic001G038601--Sobic003G409000 Sobic005G118400 Sobic005G118400 Sobic001G038601--Sobic005G118400 Sobic003G220100 Sobic003G220100 Sobic002G117500--Sobic003G220100 Sobic002G117500--Sobic001G038601 Sobic002G117500--Sobic002G124600 Sobic001G378100 Sobic001G378100 Sobic002G117500--Sobic001G378100 Sobic006G065100 Sobic006G065100 Sobic002G117500--Sobic006G065100 Sobic002G117500--Sobic008G166400 Sobic001G530900 Sobic001G530900 Sobic002G117500--Sobic001G530900 Sobic006G219600 Sobic006G219600 Sobic002G117500--Sobic006G219600 Sobic004G181600 Sobic004G181600 Sobic002G117500--Sobic004G181600 Sobic002G124600--Sobic006G219600 Sobic003G155100 Sobic003G155100 Sobic002G124600--Sobic003G155100 Sobic001G375100 Sobic001G375100 Sobic002G124600--Sobic001G375100 Sobic006G133900 Sobic006G133900 Sobic002G124600--Sobic006G133900 Sobic008G001200 Sobic008G001200 Sobic002G124600--Sobic008G001200 Sobic001G298900 Sobic001G298900 Sobic002G124600--Sobic001G298900 Sobic008G130100 Sobic008G130100 Sobic002G124600--Sobic008G130100 Sobic004G174200 Sobic004G174200 Sobic002G124600--Sobic004G174200 Sobic004G356700 Sobic004G356700 Sobic002G124600--Sobic004G356700 Sobic008G166400--Sobic002G124600 Sobic008G166400--Sobic002G117500 Sobic008G166400--Sobic001G038601 Sobic008G166400--Sobic001G530900 Sobic002G033300 Sobic002G033300 Sobic008G166400--Sobic002G033300 Sobic001G219700 Sobic001G219700 Sobic008G166400--Sobic001G219700 Sobic002G118200 Sobic002G118200 Sobic008G166400--Sobic002G118200 Sobic006G065600 Sobic006G065600 Sobic008G166400--Sobic006G065600 Sobic008G166400--Sobic004G181600 Sobic003G180600 Sobic003G180600 Sobic007G095300--Sobic003G180600 Sobic002G171101 Sobic002G171101 Sobic007G095300--Sobic002G171101 Sobic004G284001 Sobic004G284001 Sobic007G095300--Sobic004G284001 Sobic004G003600 Sobic004G003600 Sobic007G095300--Sobic004G003600 Sobic006G037900 Sobic006G037900 Sobic007G095300--Sobic006G037900 Sobic007G095300--Sobic001G038601 Sobic001G419600 Sobic001G419600 Sobic007G095300--Sobic001G419600 Sobic002G137850 Sobic002G137850 Sobic007G095300--Sobic002G137850 Sobic002G077400 Sobic002G077400 Sobic007G095300--Sobic002G077400 Sobic002G097700--Sobic010G153201 Sobic008G184900 Sobic008G184900 Sobic002G097700--Sobic008G184900 Sobic002G115050 Sobic002G115050 Sobic002G097700--Sobic002G115050 Sobic005G075100 Sobic005G075100 Sobic002G097700--Sobic005G075100 Sobic010G141966 Sobic010G141966 Sobic002G097700--Sobic010G141966 Sobic010G100516 Sobic010G100516 Sobic002G097700--Sobic010G100516 Sobic002G097700--Sobic005G118400 Sobic002G097700--Sobic004G181600 Sobic002G097700--Sobic001G038601 Sobic010G153201--Sobic002G097700 Sobic010G153201--Sobic005G118400 Sobic001G540600 Sobic001G540600 Sobic010G153201--Sobic001G540600 Sobic010G153201--Sobic001G530900 Sobic002G073250 Sobic002G073250 Sobic010G153201--Sobic002G073250 Sobic010G153201--Sobic001G378100 Sobic004G179400 Sobic004G179400 Sobic010G153201--Sobic004G179400 Sobic010G002700 Sobic010G002700 Sobic010G153201--Sobic010G002700 Sobic007G185700 Sobic007G185700 Sobic010G153201--Sobic007G185700 Sobic006G232600 Sobic006G232600 Sobic003G203300--Sobic006G232600 Sobic008G074000 Sobic008G074000 Sobic003G203300--Sobic008G074000 Sobic003G203300--Sobic001G378100 Sobic009G093100 Sobic009G093100 Sobic003G203300--Sobic009G093100 Sobic009G170200 Sobic009G170200 Sobic003G203300--Sobic009G170200 Sobic001G504400 Sobic001G504400 Sobic003G203300--Sobic001G504400 Sobic002G081400 Sobic002G081400 Sobic003G203300--Sobic002G081400 Sobic006G233700 Sobic006G233700 Sobic003G203300--Sobic006G233700 Sobic004G207400 Sobic004G207400 Sobic003G203300--Sobic004G207400 Sobic007G090451 Sobic007G090451 Sobic003G409000--Sobic007G090451 Sobic007G133000 Sobic007G133000 Sobic003G409000--Sobic007G133000 Sobic010G231300 Sobic010G231300 Sobic003G409000--Sobic010G231300 Sobic003G409000--Sobic001G038601 Sobic003G409000--Sobic004G179400 Sobic003G409000--Sobic001G540600 Sobic003G314000 Sobic003G314000 Sobic003G409000--Sobic003G314000 Sobic002G324400 Sobic002G324400 Sobic003G409000--Sobic002G324400 Sobic001G217900 Sobic001G217900 Sobic003G409000--Sobic001G217900 Sobic005G118400--Sobic010G002700 Sobic005G068700 Sobic005G068700 Sobic005G118400--Sobic005G068700 Sobic005G118400--Sobic001G378100 Sobic005G118400--Sobic001G540600 Sobic003G185900 Sobic003G185900 Sobic005G118400--Sobic003G185900 Sobic005G118400--Sobic001G504400 Sobic008G033000 Sobic008G033000 Sobic005G118400--Sobic008G033000 Sobic005G118400--Sobic001G530900 Sobic002G056500 Sobic002G056500 Sobic005G118400--Sobic002G056500
Octagon: transcription factors


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