Gene annotation
Transcriptome id Sobic.001G042901.1
Synonym -
Functional annotation -
UniProt A0A1Z5S496
Pfam PF01715
Panther DB PTHR11088 PTHR11088:SF36
NCBI CDD KOG1384; tRNA delta(2)-isopentenylpyrophosphate transferase
KEGG Orthology K10760; adenylate dimethylallyltransferase (cytokinin synthase)
Gene Ontology GO:0008033; tRNA processing


Orthologs (automatic annotation)
TAIR AT5G19040 : isopentenyltransferase 5
RAP-DB (Rice) LOC_Os03g59570.1 : IPP transferase, putative, expressed
MaizeGDB (Corn) Zm00025a016491 , Zm00025a045398 , Zm00025a008723
Brachypodium KQK20362
Barley HORVU5Hr1G110100.1 , HORVU1Hr1G011480.1
Wheat TraesCS1A02G057000 , TraesCS5D02G471100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G349200 cation efflux family protein, putative, expressed -
2 Sobic.010G059000 ANTH/ENTH domain containing protein, putative, expressed -
3 Sobic.006G064100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
4 Sobic.003G406000 OsFBO2 - F-box and other domain containing protein, expressed -
5 Sobic.003G000400 C4-dicarboxylate transporter/malic acid transport protein domain containing protein, expressed -
6 Sobic.003G266500 Phosphoethanolamine N-methyltransferase XPL1 (At)(PubMedID : 27208977)@CPuORF25 - conserved peptide uORF-containing transcript, expressed K05929: E2.1.1.103, phosphoethanolamine N-methyltransferase
7 Sobic.005G053800 pollen signalling protein with adenylyl cyclase activity, putative, expressed -
8 Sobic.010G205100 Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
9 Sobic.001G302800 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
10 Sobic.002G401900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.004G073500 "domain confirmed by Pfam database, expressed in leaf, flower and root, expression induced by BR treatment"(PubMedID : 20528920)@multidrug resistance protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
12 Sobic.003G426700 expressed protein -
13 Sobic.004G270600 MYB family transcription factor, putative, expressed -
14 Sobic.003G418100 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
15 Sobic.008G033200 stem-specific protein TSJT1, putative, expressed -
16 Sobic.002G305000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@small G protein family protein, putative, expressed -
17 Sobic.002G131200 Ser/Thr protein phosphatase family protein, putative, expressed -
18 Sobic.003G218900 GDSL-like lipase/acylhydrolase, putative, expressed -
19 Sobic.003G342100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dihydroflavonol-4-reductase, putative, expressed -
20 Sobic.003G344200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@leaf senescence related protein, putative, expressed -


Gene co-expression network
sample Sobic001G042901 Sobic001G042901 Sobic003G349200 Sobic003G349200 Sobic001G042901--Sobic003G349200 Sobic010G059000 Sobic010G059000 Sobic001G042901--Sobic010G059000 Sobic006G064100 Sobic006G064100 Sobic001G042901--Sobic006G064100 Sobic003G406000 Sobic003G406000 Sobic001G042901--Sobic003G406000 Sobic003G000400 Sobic003G000400 Sobic001G042901--Sobic003G000400 Sobic003G266500 Sobic003G266500 Sobic001G042901--Sobic003G266500 Sobic005G053800 Sobic005G053800 Sobic001G042901--Sobic005G053800 Sobic010G205100 Sobic010G205100 Sobic001G042901--Sobic010G205100 Sobic001G302800 Sobic001G302800 Sobic001G042901--Sobic001G302800 Sobic001G339500 Sobic001G339500 Sobic003G349200--Sobic001G339500 Sobic008G033200 Sobic008G033200 Sobic003G349200--Sobic008G033200 Sobic002G401900 Sobic002G401900 Sobic003G349200--Sobic002G401900 Sobic006G011300 Sobic006G011300 Sobic003G349200--Sobic006G011300 Sobic006G215600 Sobic006G215600 Sobic003G349200--Sobic006G215600 Sobic002G232200 Sobic002G232200 Sobic003G349200--Sobic002G232200 Sobic002G339600 Sobic002G339600 Sobic003G349200--Sobic002G339600 Sobic006G120500 Sobic006G120500 Sobic003G349200--Sobic006G120500 Sobic001G073900 Sobic001G073900 Sobic003G349200--Sobic001G073900 Sobic002G131200 Sobic002G131200 Sobic010G059000--Sobic002G131200 Sobic001G221800 Sobic001G221800 Sobic010G059000--Sobic001G221800 Sobic002G383800 Sobic002G383800 Sobic010G059000--Sobic002G383800 Sobic002G305000 Sobic002G305000 Sobic010G059000--Sobic002G305000 Sobic003G355200 Sobic003G355200 Sobic010G059000--Sobic003G355200 Sobic010G059000--Sobic010G205100 Sobic001G303100 Sobic001G303100 Sobic010G059000--Sobic001G303100 Sobic001G381600 Sobic001G381600 Sobic010G059000--Sobic001G381600 Sobic009G038900 Sobic009G038900 Sobic010G059000--Sobic009G038900 Sobic006G064100--Sobic010G205100 Sobic001G531500 Sobic001G531500 Sobic006G064100--Sobic001G531500 Sobic002G403600 Sobic002G403600 Sobic006G064100--Sobic002G403600 Sobic006G064100--Sobic001G073900 Sobic006G064100--Sobic006G120500 Sobic004G317500 Sobic004G317500 Sobic006G064100--Sobic004G317500 Sobic001G305600 Sobic001G305600 Sobic006G064100--Sobic001G305600 Sobic003G036200 Sobic003G036200 Sobic006G064100--Sobic003G036200 Sobic010G085100 Sobic010G085100 Sobic006G064100--Sobic010G085100 Sobic003G406000--Sobic003G349200 Sobic003G406000--Sobic008G033200 Sobic003G406000--Sobic002G401900 Sobic003G277600 Sobic003G277600 Sobic003G406000--Sobic003G277600 Sobic003G425500 Sobic003G425500 Sobic003G406000--Sobic003G425500 Sobic003G372400 Sobic003G372400 Sobic003G406000--Sobic003G372400 Sobic003G334000 Sobic003G334000 Sobic003G406000--Sobic003G334000 Sobic003G406000--Sobic001G042901 Sobic002G196600 Sobic002G196600 Sobic003G406000--Sobic002G196600 Sobic003G000400--Sobic003G349200 Sobic003G000400--Sobic001G042901 Sobic004G125100 Sobic004G125100 Sobic003G000400--Sobic004G125100 Sobic003G000400--Sobic003G406000 Sobic003G395450 Sobic003G395450 Sobic003G000400--Sobic003G395450 Sobic003G000400--Sobic001G339500 Sobic007G061100 Sobic007G061100 Sobic003G000400--Sobic007G061100 Sobic003G000400--Sobic003G372400 Sobic001G302200 Sobic001G302200 Sobic003G000400--Sobic001G302200 Sobic001G439200 Sobic001G439200 Sobic003G266500--Sobic001G439200 Sobic002G324500 Sobic002G324500 Sobic003G266500--Sobic002G324500 Sobic004G073500 Sobic004G073500 Sobic003G266500--Sobic004G073500 Sobic003G256700 Sobic003G256700 Sobic003G266500--Sobic003G256700 Sobic006G244000 Sobic006G244000 Sobic003G266500--Sobic006G244000 Sobic003G234200 Sobic003G234200 Sobic003G266500--Sobic003G234200 Sobic004G125700 Sobic004G125700 Sobic003G266500--Sobic004G125700 Sobic003G266500--Sobic004G317500 Sobic009G104800 Sobic009G104800 Sobic003G266500--Sobic009G104800 Sobic005G053200 Sobic005G053200 Sobic005G053800--Sobic005G053200 Sobic010G227800 Sobic010G227800 Sobic005G053800--Sobic010G227800 Sobic004G057500 Sobic004G057500 Sobic005G053800--Sobic004G057500 Sobic005G053700 Sobic005G053700 Sobic005G053800--Sobic005G053700 Sobic005G102900 Sobic005G102900 Sobic005G053800--Sobic005G102900 Sobic010G175400 Sobic010G175400 Sobic005G053800--Sobic010G175400 Sobic006G259700 Sobic006G259700 Sobic005G053800--Sobic006G259700 Sobic003G174301 Sobic003G174301 Sobic005G053800--Sobic003G174301 Sobic006G225900 Sobic006G225900 Sobic005G053800--Sobic006G225900 Sobic010G205100--Sobic006G064100 Sobic010G205100--Sobic010G085100 Sobic010G205100--Sobic001G531500 Sobic010G205100--Sobic001G073900 Sobic010G205100--Sobic009G038900 Sobic010G205100--Sobic003G036200 Sobic005G101200 Sobic005G101200 Sobic010G205100--Sobic005G101200 Sobic002G404800 Sobic002G404800 Sobic010G205100--Sobic002G404800 Sobic003G332700 Sobic003G332700 Sobic010G205100--Sobic003G332700 Sobic008G186400 Sobic008G186400 Sobic001G302800--Sobic008G186400 Sobic007G153900 Sobic007G153900 Sobic001G302800--Sobic007G153900 Sobic006G143100 Sobic006G143100 Sobic001G302800--Sobic006G143100 Sobic009G122350 Sobic009G122350 Sobic001G302800--Sobic009G122350 Sobic010G267700 Sobic010G267700 Sobic001G302800--Sobic010G267700 Sobic003G229600 Sobic003G229600 Sobic001G302800--Sobic003G229600 Sobic006G002900 Sobic006G002900 Sobic001G302800--Sobic006G002900 Sobic001G302800--Sobic003G349200 Sobic001G302800--Sobic004G073500
Octagon: transcription factors


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