Gene annotation
Transcriptome id Sobic.001G088500.1
Synonym Sb01g007980
Functional annotation tetratricopeptide repeat domain containing protein, expressed
UniProt A0A1Z5S4V8
Pfam PF13414
Panther DB PTHR22904 PTHR22904:SF312
NCBI CDD KOG0551; Hsp90 co-chaperone CNS1 (contains TPR repeats)
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G04130 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g53910.1 : tetratricopeptide repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a008168
Brachypodium KQK13191
Barley HORVU5Hr1G095150.7 , HORVU5Hr1G095150.6 , HORVU5Hr1G095150.5 , HORVU5Hr1G095150.4 , HORVU5Hr1G095150.3 , HORVU5Hr1G095150.2 , HORVU5Hr1G095150.1 , HORVU5Hr1G095150.9 , HORVU5Hr1G095150.8
Wheat TraesCS5A02G389800 , TraesCS5D02G399700 , TraesCS5B02G394800
Populus -


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cDNA sequences
Sobic.001G088500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
2 Sobic.009G232400 expressed protein -
3 Sobic.001G136900 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
4 Sobic.003G226500 suppressor of G2 allele of SKP1, putative, expressed K12795: SUGT1, suppressor of G2 allele of SKP1
5 Sobic.010G253800 expressed protein -
6 Sobic.002G087900 protein phosphatase inhibitor 2 containing protein, expressed K16833: PPP1R2, protein phosphatase inhibitor 2
7 Sobic.001G007200 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
8 Sobic.009G165800 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
9 Sobic.004G141700 expressed protein -
10 Sobic.004G104900 CGMC_GSK.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
11 Sobic.002G110700 uncharacterized ACR, YggU family COG1872 containing protein, expressed K09131: uncharacterized protein
12 Sobic.001G439600 26S proteasome non-ATPase regulatory subunit 4, putative, expressed K03029: PSMD4, 26S proteasome regulatory subunit N10
13 Sobic.009G246950 - K12898: heterogeneous nuclear ribonucleoprotein F/H
14 Sobic.001G054200 green ripe-like, putative, expressed -
15 Sobic.006G254700 PHF5-like protein domain containing protein, expressed K12834: PHD finger-like domain-containing protein 5A
16 Sobic.002G301400 expressed protein -
17 Sobic.004G293700 peroxisomal biogenesis factor 19, putative, expressed K13337: peroxin-19
18 Sobic.001G427800 tyrosine protein kinase domain containing protein, putative, expressed -
19 Sobic.003G350600 HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
20 Sobic.003G015900 CWC15 homolog A, putative, expressed K12863: protein CWC15


Gene co-expression network
sample Sobic001G088500 Sobic001G088500 Sobic010G083700 Sobic010G083700 Sobic001G088500--Sobic010G083700 Sobic009G232400 Sobic009G232400 Sobic001G088500--Sobic009G232400 Sobic001G136900 Sobic001G136900 Sobic001G088500--Sobic001G136900 Sobic003G226500 Sobic003G226500 Sobic001G088500--Sobic003G226500 Sobic010G253800 Sobic010G253800 Sobic001G088500--Sobic010G253800 Sobic002G087900 Sobic002G087900 Sobic001G088500--Sobic002G087900 Sobic001G007200 Sobic001G007200 Sobic001G088500--Sobic001G007200 Sobic009G165800 Sobic009G165800 Sobic001G088500--Sobic009G165800 Sobic004G141700 Sobic004G141700 Sobic001G088500--Sobic004G141700 Sobic006G263900 Sobic006G263900 Sobic010G083700--Sobic006G263900 Sobic010G168600 Sobic010G168600 Sobic010G083700--Sobic010G168600 Sobic001G054200 Sobic001G054200 Sobic010G083700--Sobic001G054200 Sobic010G083700--Sobic001G007200 Sobic009G246950 Sobic009G246950 Sobic010G083700--Sobic009G246950 Sobic004G293700 Sobic004G293700 Sobic010G083700--Sobic004G293700 Sobic010G083700--Sobic010G253800 Sobic002G256300 Sobic002G256300 Sobic010G083700--Sobic002G256300 Sobic003G007500 Sobic003G007500 Sobic010G083700--Sobic003G007500 Sobic009G232400--Sobic004G141700 Sobic001G402300 Sobic001G402300 Sobic009G232400--Sobic001G402300 Sobic003G350600 Sobic003G350600 Sobic009G232400--Sobic003G350600 Sobic001G226100 Sobic001G226100 Sobic009G232400--Sobic001G226100 Sobic009G232400--Sobic001G007200 Sobic009G232400--Sobic010G083700 Sobic010G251100 Sobic010G251100 Sobic009G232400--Sobic010G251100 Sobic009G232400--Sobic001G054200 Sobic007G118000 Sobic007G118000 Sobic009G232400--Sobic007G118000 Sobic001G439600 Sobic001G439600 Sobic001G136900--Sobic001G439600 Sobic001G136900--Sobic002G256300 Sobic004G316900 Sobic004G316900 Sobic001G136900--Sobic004G316900 Sobic001G136900--Sobic010G083700 Sobic001G136900--Sobic006G263900 Sobic002G129000 Sobic002G129000 Sobic001G136900--Sobic002G129000 Sobic006G183000 Sobic006G183000 Sobic001G136900--Sobic006G183000 Sobic006G262900 Sobic006G262900 Sobic001G136900--Sobic006G262900 Sobic001G129300 Sobic001G129300 Sobic001G136900--Sobic001G129300 Sobic003G250500 Sobic003G250500 Sobic003G226500--Sobic003G250500 Sobic004G104900 Sobic004G104900 Sobic003G226500--Sobic004G104900 Sobic003G226500--Sobic003G007500 Sobic003G226500--Sobic003G350600 Sobic003G226500--Sobic001G136900 Sobic003G226500--Sobic010G083700 Sobic004G226800 Sobic004G226800 Sobic003G226500--Sobic004G226800 Sobic001G512600 Sobic001G512600 Sobic003G226500--Sobic001G512600 Sobic003G226500--Sobic001G054200 Sobic009G146100 Sobic009G146100 Sobic010G253800--Sobic009G146100 Sobic010G253800--Sobic004G293700 Sobic010G253800--Sobic010G083700 Sobic002G247500 Sobic002G247500 Sobic010G253800--Sobic002G247500 Sobic002G352700 Sobic002G352700 Sobic010G253800--Sobic002G352700 Sobic010G253800--Sobic001G007200 Sobic010G253800--Sobic006G263900 Sobic009G171700 Sobic009G171700 Sobic010G253800--Sobic009G171700 Sobic010G253800--Sobic001G054200 Sobic002G010300 Sobic002G010300 Sobic002G087900--Sobic002G010300 Sobic002G395801 Sobic002G395801 Sobic002G087900--Sobic002G395801 Sobic002G087900--Sobic010G083700 Sobic006G254700 Sobic006G254700 Sobic002G087900--Sobic006G254700 Sobic002G087900--Sobic004G104900 Sobic002G087900--Sobic002G256300 Sobic009G259400 Sobic009G259400 Sobic002G087900--Sobic009G259400 Sobic002G087900--Sobic003G226500 Sobic010G018700 Sobic010G018700 Sobic002G087900--Sobic010G018700 Sobic001G007200--Sobic010G083700 Sobic001G415500 Sobic001G415500 Sobic001G007200--Sobic001G415500 Sobic007G186300 Sobic007G186300 Sobic001G007200--Sobic007G186300 Sobic001G007200--Sobic010G253800 Sobic004G086600 Sobic004G086600 Sobic001G007200--Sobic004G086600 Sobic001G073000 Sobic001G073000 Sobic001G007200--Sobic001G073000 Sobic001G007200--Sobic009G246950 Sobic001G007200--Sobic004G141700 Sobic001G007200--Sobic009G146100 Sobic001G080700 Sobic001G080700 Sobic009G165800--Sobic001G080700 Sobic001G047400 Sobic001G047400 Sobic009G165800--Sobic001G047400 Sobic006G101700 Sobic006G101700 Sobic009G165800--Sobic006G101700 Sobic002G110700 Sobic002G110700 Sobic009G165800--Sobic002G110700 Sobic003G015900 Sobic003G015900 Sobic009G165800--Sobic003G015900 Sobic009G165800--Sobic010G083700 Sobic010G251000 Sobic010G251000 Sobic009G165800--Sobic010G251000 Sobic004G121100 Sobic004G121100 Sobic009G165800--Sobic004G121100 Sobic003G264200 Sobic003G264200 Sobic009G165800--Sobic003G264200 Sobic004G141700--Sobic009G232400 Sobic004G141700--Sobic001G007200 Sobic010G193800 Sobic010G193800 Sobic004G141700--Sobic010G193800 Sobic004G141700--Sobic001G402300 Sobic004G141700--Sobic001G226100 Sobic004G141700--Sobic001G054200 Sobic004G141700--Sobic010G018700 Sobic004G141700--Sobic010G083700 Sobic004G141700--Sobic001G439600
Octagon: transcription factors


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