Gene annotation
Transcriptome id Sobic.001G141600.1
Synonym Sb01g012320
Functional annotation protein binding protein, putative, expressed
UniProt C5WQ98
Pfam PF13920
Panther DB PTHR10044 PTHR10044:SF114
NCBI CDD KOG1100; Predicted E3 ubiquitin ligase
KEGG Orthology K19042; E3 ubiquitin-protein ligase BOI and related proteins
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G12920 : SBP (S-ribonuclease binding protein) family protein
RAP-DB (Rice) LOC_Os03g46570.1 : protein binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a017136 , Zm00025a007519
Brachypodium -
Barley HORVU4Hr1G003180.8 , HORVU4Hr1G003180.6 , HORVU4Hr1G003180.7 , HORVU4Hr1G003180.4 , HORVU4Hr1G003180.5 , HORVU4Hr1G003180.2 , HORVU4Hr1G003180.3 , HORVU4Hr1G003180.1 , HORVU7Hr1G100520.4 , HORVU7Hr1G100520.1 , HORVU7Hr1G100520.3 , HORVU7Hr1G100520.2
Wheat TraesCS4A02G293700 , TraesCS3D02G441300 , TraesCS4B02G019600 , TraesCS7B02G340600 , TraesCS7B02G340500 , TraesCS3D02G441000 , TraesCS7D02G431300 , TraesCS7A02G442300 , TraesCS3A02G448500 , TraesCS4D02G018100
Populus -


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cDNA sequences
Sobic.001G141600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G108400 expressed protein -
2 Sobic.001G111700 alpha/beta-Hydrolases superfamily protein(PubMedID : 26465154)@alpha/beta-Hydrolases superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
3 Sobic.001G317400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
4 Sobic.007G126400 CPuORF27 - conserved peptide uORF-containing transcript, expressed K09338: homeobox-leucine zipper protein
5 Sobic.001G391900 nifU, putative, expressed -
6 Sobic.009G196800 cytochrome P450, putative, expressed -
7 Sobic.009G113800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Os5bglu20 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase
8 Sobic.010G153900 Spermidine synthase(PubMedID : 27325899)@Up-regulated by silicon application under drought stress(PubMedID : 24813726)@"OsSPMS1(Ortholog in rice:Tao et al., 2018)"(PubMedID : 31659935)@spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
9 Sobic.002G421300 stress responsive protein, putative, expressed -
10 Sobic.004G026300 heat shock protein 18.2(PubMedID : 26465154)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
11 Sobic.005G015200 Phototropic-responsive NPH3 family protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@BTBN22 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
12 Sobic.004G255600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@neutral/alkaline invertase, putative, expressed -
13 Sobic.006G134400 protein FAM133, putative, expressed -
14 Sobic.005G188600 - -
15 Sobic.006G151600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytokinin-O-glucosyltransferase 3, putative, expressed -
16 Sobic.001G158900 helix-loop-helix DNA-binding domain containing protein, expressed K16189: phytochrome-interacting factor 4
17 Sobic.004G351700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ZOS2-19 - C2H2 zinc finger protein, expressed -
18 Sobic.005G209400 TKL_IRAK_DUF26-lh.6 - DUF26 kinases have homology to DUF26 containing loci, expressed -
19 Sobic.010G006350 - -
20 Sobic.001G129000 DnaK family protein, putative, expressed -


Gene co-expression network
sample Sobic001G141600 Sobic001G141600 Sobic008G108400 Sobic008G108400 Sobic001G141600--Sobic008G108400 Sobic001G111700 Sobic001G111700 Sobic001G141600--Sobic001G111700 Sobic001G317400 Sobic001G317400 Sobic001G141600--Sobic001G317400 Sobic007G126400 Sobic007G126400 Sobic001G141600--Sobic007G126400 Sobic001G391900 Sobic001G391900 Sobic001G141600--Sobic001G391900 Sobic009G196800 Sobic009G196800 Sobic001G141600--Sobic009G196800 Sobic009G113800 Sobic009G113800 Sobic001G141600--Sobic009G113800 Sobic010G153900 Sobic010G153900 Sobic001G141600--Sobic010G153900 Sobic002G421300 Sobic002G421300 Sobic001G141600--Sobic002G421300 Sobic008G108400--Sobic010G153900 Sobic008G108400--Sobic002G421300 Sobic008G108400--Sobic001G111700 Sobic008G108400--Sobic009G113800 Sobic003G241900 Sobic003G241900 Sobic008G108400--Sobic003G241900 Sobic004G026300 Sobic004G026300 Sobic008G108400--Sobic004G026300 Sobic009G054900 Sobic009G054900 Sobic008G108400--Sobic009G054900 Sobic007G140800 Sobic007G140800 Sobic008G108400--Sobic007G140800 Sobic008G115900 Sobic008G115900 Sobic008G108400--Sobic008G115900 Sobic001G111700--Sobic004G026300 Sobic010G183100 Sobic010G183100 Sobic001G111700--Sobic010G183100 Sobic007G189700 Sobic007G189700 Sobic001G111700--Sobic007G189700 Sobic004G351700 Sobic004G351700 Sobic001G111700--Sobic004G351700 Sobic003G199800 Sobic003G199800 Sobic001G111700--Sobic003G199800 Sobic009G222200 Sobic009G222200 Sobic001G111700--Sobic009G222200 Sobic003G036100 Sobic003G036100 Sobic001G111700--Sobic003G036100 Sobic004G353700 Sobic004G353700 Sobic001G111700--Sobic004G353700 Sobic001G111700--Sobic008G108400 Sobic002G036000 Sobic002G036000 Sobic001G317400--Sobic002G036000 Sobic001G317400--Sobic001G391900 Sobic003G443500 Sobic003G443500 Sobic001G317400--Sobic003G443500 Sobic008G026800 Sobic008G026800 Sobic001G317400--Sobic008G026800 Sobic002G403600 Sobic002G403600 Sobic001G317400--Sobic002G403600 Sobic007G034300 Sobic007G034300 Sobic001G317400--Sobic007G034300 Sobic001G158900 Sobic001G158900 Sobic001G317400--Sobic001G158900 Sobic005G118300 Sobic005G118300 Sobic001G317400--Sobic005G118300 Sobic008G053200 Sobic008G053200 Sobic001G317400--Sobic008G053200 Sobic005G188600 Sobic005G188600 Sobic007G126400--Sobic005G188600 Sobic001G484400 Sobic001G484400 Sobic007G126400--Sobic001G484400 Sobic003G003600 Sobic003G003600 Sobic007G126400--Sobic003G003600 Sobic008G094000 Sobic008G094000 Sobic007G126400--Sobic008G094000 Sobic001G073900 Sobic001G073900 Sobic007G126400--Sobic001G073900 Sobic010G099700 Sobic010G099700 Sobic007G126400--Sobic010G099700 Sobic005G110502 Sobic005G110502 Sobic007G126400--Sobic005G110502 Sobic007G126400--Sobic008G115900 Sobic001G065600 Sobic001G065600 Sobic007G126400--Sobic001G065600 Sobic002G102200 Sobic002G102200 Sobic001G391900--Sobic002G102200 Sobic006G093900 Sobic006G093900 Sobic001G391900--Sobic006G093900 Sobic002G030500 Sobic002G030500 Sobic001G391900--Sobic002G030500 Sobic001G391900--Sobic002G036000 Sobic006G188000 Sobic006G188000 Sobic001G391900--Sobic006G188000 Sobic009G059300 Sobic009G059300 Sobic001G391900--Sobic009G059300 Sobic001G102800 Sobic001G102800 Sobic001G391900--Sobic001G102800 Sobic004G227200 Sobic004G227200 Sobic001G391900--Sobic004G227200 Sobic003G387100 Sobic003G387100 Sobic001G391900--Sobic003G387100 Sobic010G019700 Sobic010G019700 Sobic009G196800--Sobic010G019700 Sobic007G171600 Sobic007G171600 Sobic009G196800--Sobic007G171600 Sobic004G023200 Sobic004G023200 Sobic009G196800--Sobic004G023200 Sobic001G233400 Sobic001G233400 Sobic009G196800--Sobic001G233400 Sobic003G069100 Sobic003G069100 Sobic009G196800--Sobic003G069100 Sobic002G098800 Sobic002G098800 Sobic009G196800--Sobic002G098800 Sobic001G069000 Sobic001G069000 Sobic009G196800--Sobic001G069000 Sobic002G033800 Sobic002G033800 Sobic009G196800--Sobic002G033800 Sobic009G085500 Sobic009G085500 Sobic009G196800--Sobic009G085500 Sobic006G207800 Sobic006G207800 Sobic009G113800--Sobic006G207800 Sobic009G113800--Sobic007G140800 Sobic009G113800--Sobic001G102800 Sobic004G274100 Sobic004G274100 Sobic009G113800--Sobic004G274100 Sobic002G193800 Sobic002G193800 Sobic009G113800--Sobic002G193800 Sobic004G331700 Sobic004G331700 Sobic009G113800--Sobic004G331700 Sobic003G303700 Sobic003G303700 Sobic009G113800--Sobic003G303700 Sobic009G237100 Sobic009G237100 Sobic009G113800--Sobic009G237100 Sobic007G009200 Sobic007G009200 Sobic009G113800--Sobic007G009200 Sobic010G153900--Sobic007G140800 Sobic008G188600 Sobic008G188600 Sobic010G153900--Sobic008G188600 Sobic009G043000 Sobic009G043000 Sobic010G153900--Sobic009G043000 Sobic010G201700 Sobic010G201700 Sobic010G153900--Sobic010G201700 Sobic010G153900--Sobic003G303700 Sobic010G095000 Sobic010G095000 Sobic010G153900--Sobic010G095000 Sobic010G153900--Sobic006G207800 Sobic010G153900--Sobic003G241900 Sobic001G020100 Sobic001G020100 Sobic010G153900--Sobic001G020100 Sobic002G421300--Sobic003G241900 Sobic002G421300--Sobic010G153900 Sobic002G421300--Sobic004G026300 Sobic002G421300--Sobic008G108400 Sobic002G421300--Sobic003G303700 Sobic002G421300--Sobic003G199800 Sobic002G421300--Sobic009G043000 Sobic003G131000 Sobic003G131000 Sobic002G421300--Sobic003G131000 Sobic002G421300--Sobic002G098800
Octagon: transcription factors


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