Gene annotation
| Transcriptome id | Sobic.008G108400.1 |
|---|---|
| Synonym | |
| Functional annotation | expressed protein |
| UniProt | A0A1B6PCZ4 |
| Pfam | - |
| Panther DB | PTHR33167 PTHR33167:SF6 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G67390 : - |
|---|---|
| RAP-DB (Rice) | LOC_Os12g32360.1 : expressed protein |
| MaizeGDB (Corn) | Zm00025a040660 , Zm00025a025579 |
| Brachypodium | KQJ87625 |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.008G108400 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.010G153900 | Spermidine synthase(PubMedID : 27325899)@Up-regulated by silicon application under drought stress(PubMedID : 24813726)@"OsSPMS1(Ortholog in rice:Tao et al., 2018)"(PubMedID : 31659935)@spermidine synthase, putative, expressed | K00797: speE, SRM, spermidine synthase |
| 2 | Sobic.002G421300 | stress responsive protein, putative, expressed | - |
| 3 | Sobic.001G111700 | alpha/beta-Hydrolases superfamily protein(PubMedID : 26465154)@alpha/beta-Hydrolases superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed | - |
| 4 | Sobic.009G113800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Os5bglu20 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed | K01188: beta-glucosidase |
| 5 | Sobic.003G241900 | expressed protein | - |
| 6 | Sobic.004G026300 | heat shock protein 18.2(PubMedID : 26465154)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 7 | Sobic.009G054900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@relA-SpoT like protein RSH4, putative, expressed | - |
| 8 | Sobic.007G140800 | Fatty acid desaturase 6 (omega-6 fatty acid desaturase) FAD6 (At)(PubMedID : 27208977)@omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed | K10255: FAD6, acyl-lipid omega-6 desaturase (Delta-12 desaturase) |
| 9 | Sobic.008G115900 | mitochondrial carrier protein, putative, expressed | - |
| 10 | Sobic.003G303700 | Protein thylakoid membrane phosphoprotein 14 kda (Os)(PubMedID : 27208977)@expressed protein | - |
| 11 | Sobic.001G141600 | protein binding protein, putative, expressed | K19042: E3 ubiquitin-protein ligase BOI and related proteins |
| 12 | Sobic.001G329400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed | - |
| 13 | Sobic.004G283100 | -(PubMedID : 26465154)@expressed protein | - |
| 14 | Sobic.004G274100 | expressed protein | - |
| 15 | Sobic.006G130300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed | K19269: PGP, phosphoglycolate phosphatase |
| 16 | Sobic.003G234400 | CA(PubMedID : 19549309)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed | K01673: cynT, carbonic anhydrase |
| 17 | Sobic.002G098800 | peroxiredoxin, putative, expressed | - |
| 18 | Sobic.003G036100 | - | - |
| 19 | Sobic.010G095000 | kinase, pfkB family, putative, expressed | K00847: E2.7.1.4, fructokinase |
| 20 | Sobic.008G188600 | glyoxalase family protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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